Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    49:67 50:66 51:65 52:64 53:63 151:190 152:189 153:188
	    154:187 155:185 156:184 206:237 207:236 208:235 209:234 210:233
	    255:291 256:290 257:289 258:288 259:287 260:286 261:285
	Energy of Broken Structure: -76.0
	Energy of Pseudo-Helices:   -40.2
	Pseudoknot Energy Penalty:  31.4
	Total Free Energy:          -84.8
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-351
		Stack = -1.5  for stack of 2-350
		Stack = -2.1  for stack of 3-349
		Stack = -3.3  for stack of 4-348
		Stack = -3.4  for stack of 5-347
		Stack = -2.4  for stack of 6-346
	Helix total = -16.0
	Multiloop = 5.2  for closure of 7-345
		Stack = -3.4  for stack of 328-344
		Stack = -2.4  for stack of 329-343
		Stack = -3.3  for stack of 330-342
		Stack = -3.3  for stack of 331-341
	Helix total = -12.4
	Hairpin = 4.4  for closure of 332-340
		Stack = -2.1  for stack of 21-324
		Stack = -2.1  for stack of 22-323
		Stack = -1.5  for stack of 23-322
		Stack = -1.3  for stack of 24-321
	Helix total = -7.0
	Internal/bulge = 0.0  for closure of 25-320	Size = 4
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 28-317	Size = 9
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 34-312	Size = 2
		Stack = -3.3  for stack of 36-310
	Helix total = -3.3
	Internal/bulge = 1.1  for closure of 37-309	Size = 2
		Stack = -2.1  for stack of 39-307
		Stack = -3.3  for stack of 40-306
	Helix total = -5.4
	Internal/bulge = -0.1  for closure of 41-305	Size = 2
	Helix total = 0.0
	Internal/bulge = 3.2  for closure of 43-303	Size = 3
		Stack = -2.1  for stack of 44-299
		Stack = -1.1  for stack of 45-298
		Stack = -2.1  for stack of 46-297
		Stack = -3.4  for stack of 47-296
	Helix total = -8.7
	Multiloop = 2.3  for closure of 48-295
		Stack = -2.2  for stack of 240-275
		Stack = -3.3  for stack of 241-274
		Stack = -2.4  for stack of 242-273
		Stack = -2.2  for stack of 243-272
	Helix total = -10.1
	Internal/bulge = 2.3  for closure of 244-271	Size = 1 BP stack across bulge = -0.9
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 246-270	Size = 2
		Stack = -1.5  for stack of 248-268
	Helix total = -1.5
	Internal/bulge = 2.6  for closure of 249-267	Size = 3
		Stack = -2.4  for stack of 251-264
		Stack = -3.3  for stack of 252-263
	Helix total = -5.7
	Hairpin = 4.1  for closure of 253-262
		Stack = -3.4  for stack of 193-222
		Stack = -2.4  for stack of 194-221
	Helix total = -5.8
	Internal/bulge = 2.7  for closure of 195-220	Size = 9
		Stack = -2.2  for stack of 201-215
		Stack = -3.3  for stack of 202-214
		Stack = -3.3  for stack of 203-213
		Stack = -2.1  for stack of 204-212
	Helix total = -10.9
	Hairpin = 4.6  for closure of 205-211
		Stack = -3.3  for stack of 133-174
		Stack = -2.1  for stack of 134-173
		Stack = -1.1  for stack of 135-172
		Stack = -2.4  for stack of 136-171
	Helix total = -8.9
	Internal/bulge = 2.6  for closure of 137-170	Size = 6
		Stack = -3.3  for stack of 140-165
		Stack = -2.1  for stack of 141-164
		Stack = -2.2  for stack of 142-163
	Helix total = -7.6
	Internal/bulge = 2.3  for closure of 143-162	Size = 3
	Helix total = 0.0
	Internal/bulge = 0.7  for closure of 146-160	Size = 1 BP stack across bulge = -2.5
		Stack = -0.5  for stack of 148-159
		Stack = -1.5  for stack of 149-158
	Helix total = -2.0
	Hairpin = 3.9  for closure of 150-157
		Stack = -2.1  for stack of 112-132
		Stack = -1.3  for stack of 113-131
		Stack = -2.1  for stack of 114-130
		Stack = -3.4  for stack of 115-129
	Helix total = -8.9
	Internal/bulge = 0.5  for closure of 116-128	Size = 2
		Stack = -3.4  for stack of 118-126
	Helix total = -3.4
	Hairpin = 3.6  for closure of 119-125
		Stack = -3.4  for stack of 55-78
		Stack = -2.4  for stack of 56-77
		Stack = -3.3  for stack of 57-76
		Stack = -2.5  for stack of 58-75
		Stack = -0.6  for stack of 59-74
	Helix total = -12.2
	Hairpin = 5.2  for closure of 60-73


	Total energy = -76.0



