Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    49:67 50:66 51:65 52:64 53:63 152:191 153:190 154:189
	    155:188 156:186 157:185 207:238 208:237 209:236 210:235 211:234
	    256:292 257:291 258:290 259:289 260:288 261:287 262:286
	Energy of Broken Structure: -70.7
	Energy of Pseudo-Helices:   -38.2
	Pseudoknot Energy Penalty:  31.5
	Total Free Energy:          -77.4
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-352
		Stack = -1.5  for stack of 2-351
		Stack = -2.1  for stack of 3-350
		Stack = -3.3  for stack of 4-349
		Stack = -3.4  for stack of 5-348
		Stack = -2.4  for stack of 6-347
	Helix total = -16.0
	Multiloop = 5.2  for closure of 7-346
		Stack = -3.4  for stack of 329-345
		Stack = -2.4  for stack of 330-344
		Stack = -3.3  for stack of 331-343
		Stack = -3.3  for stack of 332-342
	Helix total = -12.4
	Hairpin = 4.4  for closure of 333-341
		Stack = -2.4  for stack of 21-325
		Stack = -1.5  for stack of 22-324
		Stack = -0.5  for stack of 23-323
		Stack = -1.3  for stack of 24-322
	Helix total = -5.7
	Internal/bulge = 0.0  for closure of 25-321	Size = 4
	Helix total = 0.0
	Internal/bulge = 2.2  for closure of 28-318	Size = 11
		Stack = -2.1  for stack of 35-312
		Stack = -2.4  for stack of 36-311
	Helix total = -4.5
	Internal/bulge = 1.2  for closure of 37-310	Size = 2
		Stack = -2.1  for stack of 39-308
		Stack = -3.3  for stack of 40-307
	Helix total = -5.4
	Internal/bulge = -0.1  for closure of 41-306	Size = 2
	Helix total = 0.0
	Internal/bulge = 3.2  for closure of 43-304	Size = 3
		Stack = -2.1  for stack of 44-300
		Stack = -1.1  for stack of 45-299
		Stack = -2.1  for stack of 46-298
		Stack = -3.4  for stack of 47-297
	Helix total = -8.7
	Multiloop = 2.3  for closure of 48-296
		Stack = -2.2  for stack of 241-276
		Stack = -3.3  for stack of 242-275
		Stack = -2.4  for stack of 243-274
		Stack = -2.5  for stack of 244-273
	Helix total = -10.4
	Internal/bulge = 4.1  for closure of 245-272	Size = 7
	Helix total = 0.0
	Internal/bulge = 2.6  for closure of 250-268	Size = 3
		Stack = -2.4  for stack of 252-265
		Stack = -3.3  for stack of 253-264
	Helix total = -5.7
	Hairpin = 4.1  for closure of 254-263
		Stack = -3.4  for stack of 194-223
		Stack = -2.4  for stack of 195-222
	Helix total = -5.8
	Internal/bulge = 2.7  for closure of 196-221	Size = 9
		Stack = -2.2  for stack of 202-216
		Stack = -3.3  for stack of 203-215
		Stack = -2.1  for stack of 204-214
		Stack = -0.5  for stack of 205-213
	Helix total = -8.1
	Hairpin = 4.6  for closure of 206-212
		Stack = -3.3  for stack of 134-175
		Stack = -2.1  for stack of 135-174
		Stack = -1.1  for stack of 136-173
		Stack = -2.4  for stack of 137-172
	Helix total = -8.9
	Internal/bulge = 2.6  for closure of 138-171	Size = 6
		Stack = -3.3  for stack of 141-166
		Stack = -2.1  for stack of 142-165
		Stack = -2.2  for stack of 143-164
	Helix total = -7.6
	Internal/bulge = 1.1  for closure of 144-163	Size = 3
	Helix total = 0.0
	Internal/bulge = 0.4  for closure of 147-161	Size = 1 BP stack across bulge = -3.4
		Stack = -2.1  for stack of 149-160
		Stack = -1.5  for stack of 150-159
	Helix total = -3.6
	Hairpin = 3.9  for closure of 151-158
		Stack = -2.1  for stack of 112-133
		Stack = -2.1  for stack of 113-132
		Stack = -3.3  for stack of 114-131
		Stack = -3.4  for stack of 115-130
	Helix total = -10.9
	Internal/bulge = 1.7  for closure of 116-129	Size = 1 BP stack across bulge = -2.1
	Helix total = 0.0
	Hairpin = 5.5  for closure of 117-127
		Stack = -3.4  for stack of 55-78
		Stack = -2.4  for stack of 56-77
		Stack = -3.3  for stack of 57-76
		Stack = -2.5  for stack of 58-75
		Stack = -0.6  for stack of 59-74
	Helix total = -12.2
	Hairpin = 5.2  for closure of 60-73


	Total energy = -70.7



