Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    252:323 254:322 255:321 256:320 257:319 258:318
	Energy of Broken Structure: -41.9
	Energy of Pseudo-Helices:   -8.0
	Pseudoknot Energy Penalty:  8.0
	Total Free Energy:          -41.9
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -2.9
		Stack = -1.4  for stack of 325-349
	Helix total = -1.4
	Internal/bulge = 3.8  for closure of 326-348	Size = 5
		Stack = -0.5  for stack of 328-343
		Stack = -2.5  for stack of 329-342
		Stack = -2.1  for stack of 330-341
		Stack = -0.9  for stack of 331-340
		Stack = -2.4  for stack of 332-339
	Helix total = -8.4
	Hairpin = 3.3  for closure of 333-338
		Stack = -1.4  for stack of 270-309
		Stack = 0.3  for stack of 271-308
		Stack = -2.5  for stack of 272-307
		Stack = -2.1  for stack of 273-306
		Stack = -1.1  for stack of 274-305
		Stack = -0.9  for stack of 275-304
		Stack = -1.3  for stack of 276-303
		Stack = -0.9  for stack of 277-302
	Helix total = -9.9
	Hairpin = 6.1  for closure of 278-301
		Stack = -0.9  for stack of 41-268
		Stack = -2.2  for stack of 42-267
		Stack = -2.1  for stack of 43-266
		Stack = -1.3  for stack of 44-265
		Stack = -2.2  for stack of 45-264
		Stack = -3.3  for stack of 46-263
	Helix total = -12.0
	Multiloop = 8.3  for closure of 47-262
		Stack = -2.4  for stack of 211-248
	Helix total = -2.4
	Internal/bulge = 1.9  for closure of 212-247	Size = 10
		Stack = -2.1  for stack of 218-241
		Stack = -2.1  for stack of 219-240
		Stack = -2.2  for stack of 220-239
		Stack = -1.3  for stack of 221-238
		Stack = -0.9  for stack of 222-237
		Stack = -1.1  for stack of 223-236
		Stack = -1.3  for stack of 224-235
	Helix total = -11.0
	Hairpin = 5.4  for closure of 225-234
		Stack = -2.4  for stack of 52-210
		Stack = -3.3  for stack of 53-209
		Stack = -2.4  for stack of 54-208
	Helix total = -8.1
	Internal/bulge = 0.5  for closure of 55-207	Size = 1 BP stack across bulge = -3.3
		Stack = -1.5  for stack of 56-205
	Helix total = -1.5
	Internal/bulge = 3.1  for closure of 57-204	Size = 7
		Stack = -2.4  for stack of 62-200
		Stack = -3.3  for stack of 63-199
	Helix total = -5.7
	Multiloop = 5.1  for closure of 64-198
	Helix total = 0.0
	Internal/bulge = 0.5  for closure of 182-195	Size = 4
		Stack = -2.4  for stack of 185-192
	Helix total = -2.4
	Hairpin = 3.3  for closure of 186-191
		Stack = -2.1  for stack of 70-180
		Stack = -0.9  for stack of 71-179
		Stack = -2.4  for stack of 72-178
		Stack = -2.1  for stack of 73-177
		Stack = -2.1  for stack of 74-176
		Stack = -2.4  for stack of 75-175
	Helix total = -12.0
	Internal/bulge = 2.7  for closure of 76-174	Size = 1 BP stack across bulge = -1.1
	Helix total = 0.0
	Internal/bulge = 4.6  for closure of 77-172	Size = 4
		Stack = -2.2  for stack of 78-167
		Stack = -3.3  for stack of 79-166
	Helix total = -5.5
	Multiloop = 4.5  for closure of 80-165
		Stack = -0.9  for stack of 126-152
		Stack = -0.9  for stack of 127-151
		Stack = -0.9  for stack of 128-150
		Stack = -0.9  for stack of 129-149
		Stack = -0.9  for stack of 130-148
		Stack = -1.3  for stack of 131-147
	Helix total = -5.8
	Hairpin = 5.6  for closure of 132-146
		Stack = -2.1  for stack of 108-124
		Stack = -2.1  for stack of 109-123
	Helix total = -4.2
	Internal/bulge = 1.0  for closure of 110-122	Size = 1 BP stack across bulge = -2.4
		Stack = -2.1  for stack of 112-121
		Stack = -2.2  for stack of 113-120
	Helix total = -4.3
	Hairpin = 5.3  for closure of 114-119
		Stack = -2.5  for stack of 83-105
	Helix total = -2.5
	Internal/bulge = 3.0  for closure of 84-104	Size = 5
		Stack = -1.3  for stack of 87-100
		Stack = -2.1  for stack of 88-99
		Stack = -2.5  for stack of 89-98
		Stack = -1.5  for stack of 90-97
	Helix total = -7.4
	Hairpin = 3.3  for closure of 91-96
		Stack = -1.3  for stack of 1-39
		Stack = -2.1  for stack of 2-38
		Stack = -3.3  for stack of 3-37
		Stack = -3.4  for stack of 4-36
		Stack = -2.1  for stack of 5-35
	Helix total = -12.2
	Hairpin = 6.4  for closure of 6-34


	Total energy = -41.9



