Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    211:266 213:265 214:264 215:263 216:262 217:261
	Energy of Broken Structure: -33.1
	Energy of Pseudo-Helices:   -8.0
	Pseudoknot Energy Penalty:  7.6
	Total Free Energy:          -33.5
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.3
		Stack = -0.9  for stack of 270-298
		Stack = -1.3  for stack of 271-297
		Stack = -1.1  for stack of 272-296
		Stack = -1.3  for stack of 273-295
		Stack = -1.1  for stack of 274-294
		Stack = -1.3  for stack of 275-293
		Stack = -1.1  for stack of 276-292
		Stack = -1.3  for stack of 277-291
		Stack = -1.1  for stack of 278-290
		Stack = -1.3  for stack of 279-289
		Stack = -1.1  for stack of 280-288
		Stack = -1.3  for stack of 281-287
	Helix total = -14.2
	Hairpin = 5.9  for closure of 282-286
		Stack = -1.3  for stack of 227-254
		Stack = -1.1  for stack of 228-253
		Stack = -0.9  for stack of 229-252
		Stack = -1.3  for stack of 230-251
		Stack = -0.9  for stack of 231-250
		Stack = -0.9  for stack of 232-249
		Stack = -1.1  for stack of 233-248
		Stack = -1.3  for stack of 234-247
		Stack = -0.9  for stack of 235-246
		Stack = -1.1  for stack of 236-245
		Stack = -0.9  for stack of 237-244
	Helix total = -11.7
	Hairpin = 5.6  for closure of 238-243
		Stack = -0.9  for stack of 51-226
		Stack = -0.9  for stack of 52-225
		Stack = -0.9  for stack of 53-224
		Stack = -0.9  for stack of 54-223
		Stack = -2.4  for stack of 55-222
	Helix total = -6.0
	Multiloop = 7.3  for closure of 56-221
		Stack = -3.3  for stack of 156-207
	Helix total = -3.3
	Internal/bulge = 3.4  for closure of 157-206	Size = 12
		Stack = -1.3  for stack of 164-199
		Stack = -0.9  for stack of 165-198
		Stack = -1.1  for stack of 166-197
		Stack = -1.3  for stack of 167-196
	Helix total = -4.6
	Internal/bulge = 4.6  for closure of 168-195	Size = 6
		Stack = -1.1  for stack of 173-192
		Stack = -2.4  for stack of 174-191
		Stack = -2.1  for stack of 175-190
		Stack = -0.9  for stack of 176-189
	Helix total = -6.5
	Hairpin = 6.0  for closure of 177-188
		Stack = -2.1  for stack of 61-155
		Stack = -3.4  for stack of 62-154
		Stack = -2.1  for stack of 63-153
		Stack = -2.1  for stack of 64-152
		Stack = -1.5  for stack of 65-151
	Helix total = -11.2
	Internal/bulge = 3.4  for closure of 66-150	Size = 4
		Stack = -1.1  for stack of 69-147
		Stack = -0.9  for stack of 70-146
		Stack = -1.3  for stack of 71-145
		Stack = -1.1  for stack of 72-144
	Helix total = -4.4
	Internal/bulge = 4.7  for closure of 73-143	Size = 12
		Stack = -1.1  for stack of 81-137
		Stack = -2.1  for stack of 82-136
		Stack = -2.4  for stack of 83-135
		Stack = -0.9  for stack of 84-134
		Stack = -1.1  for stack of 85-133
	Helix total = -7.6
	Hairpin = 7.2  for closure of 86-132
		Stack = -1.3  for stack of 18-46
		Stack = -1.1  for stack of 19-45
		Stack = -1.3  for stack of 20-44
		Stack = -1.0  for stack of 21-43
		Stack = -1.1  for stack of 22-42
		Stack = -0.9  for stack of 23-41
		Stack = -1.3  for stack of 24-40
		Stack = -1.1  for stack of 25-39
		Stack = -1.3  for stack of 26-38
		Stack = -1.1  for stack of 27-37
	Helix total = -11.5
	Hairpin = 5.1  for closure of 28-36
		Stack = -3.3  for stack of 1-15
		Stack = -2.5  for stack of 2-14
		Stack = -1.5  for stack of 3-13
		Stack = -2.1  for stack of 4-12
	Helix total = -9.4
	Hairpin = 5.4  for closure of 5-11


	Total energy = -33.1



