Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    15:278 16:277 17:276 18:275 19:274 20:273 55:244 56:243
	    57:242 58:241 59:240 60:239
	Energy of Broken Structure: -89.6
	Energy of Pseudo-Helices:   -25.2
	Pseudoknot Energy Penalty:  17.2
	Total Free Energy:          -97.6
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = 0.0
		Stack = -2.1  for stack of 2-312
		Stack = -3.3  for stack of 3-311
		Stack = -3.3  for stack of 4-310
		Stack = -3.3  for stack of 5-309
		Stack = -2.4  for stack of 6-308
		Stack = -2.1  for stack of 7-307
		Stack = -3.4  for stack of 8-306
		Stack = -3.3  for stack of 9-305
		Stack = -2.1  for stack of 10-304
		Stack = -1.3  for stack of 11-303
		Stack = -0.9  for stack of 12-302
		Stack = -2.2  for stack of 13-301
	Helix total = -29.7
	Multiloop = 6.8  for closure of 14-300
		Stack = -0.9  for stack of 41-296
		Stack = -2.2  for stack of 42-295
	Helix total = -3.1
	Internal/bulge = 0.5  for closure of 43-294	Size = 1 BP stack across bulge = -3.3
		Stack = -3.3  for stack of 45-293
		Stack = -2.1  for stack of 46-292
		Stack = -2.1  for stack of 47-291
		Stack = -3.4  for stack of 48-290
	Helix total = -10.9
	Multiloop = 5.8  for closure of 49-289
		Stack = -2.2  for stack of 221-260
	Helix total = -2.2
	Internal/bulge = 5.2  for closure of 222-259	Size = 5
		Stack = -2.1  for stack of 224-254
		Stack = -3.3  for stack of 225-253
		Stack = -2.4  for stack of 226-252
		Stack = -2.1  for stack of 227-251
		Stack = -3.3  for stack of 228-250
		Stack = -3.3  for stack of 229-249
	Helix total = -16.5
	Hairpin = 4.6  for closure of 230-248
		Stack = -2.1  for stack of 50-217
		Stack = -2.4  for stack of 51-216
		Stack = -3.3  for stack of 52-215
	Helix total = -7.8
	Internal/bulge = 5.2  for closure of 53-214	Size = 8
		Stack = -2.1  for stack of 62-213
		Stack = -3.3  for stack of 63-212
		Stack = -3.3  for stack of 64-211
		Stack = -2.4  for stack of 65-210
	Helix total = -11.1
	Multiloop = 3.7  for closure of 66-209
		Stack = -3.3  for stack of 95-208
	Helix total = -3.3
	Internal/bulge = 6.7  for closure of 96-207	Size = 32
		Stack = -3.3  for stack of 116-193
		Stack = -2.4  for stack of 117-192
		Stack = -3.3  for stack of 118-191
		Stack = -2.2  for stack of 119-190
		Stack = -1.3  for stack of 120-189
		Stack = -1.1  for stack of 121-188
		Stack = -1.3  for stack of 122-187
		Stack = -0.9  for stack of 123-186
		Stack = -1.1  for stack of 124-185
		Stack = -1.3  for stack of 125-184
		Stack = -2.1  for stack of 126-183
		Stack = -3.3  for stack of 127-182
	Helix total = -23.6
	Internal/bulge = 7.2  for closure of 128-181	Size = 24
		Stack = -1.3  for stack of 146-173
		Stack = -1.1  for stack of 147-172
		Stack = -2.1  for stack of 148-171
		Stack = -2.2  for stack of 149-170
		Stack = -1.3  for stack of 150-169
		Stack = -2.1  for stack of 151-168
		Stack = -2.5  for stack of 152-167
		Stack = -1.5  for stack of 153-166
		Stack = -2.1  for stack of 154-165
		Stack = -1.3  for stack of 155-164
		Stack = -2.1  for stack of 156-163
	Helix total = -19.6
	Hairpin = 3.1  for closure of 157-162
		Stack = -2.1  for stack of 81-94
		Stack = -1.5  for stack of 82-93
		Stack = -2.1  for stack of 83-92
		Stack = -2.5  for stack of 84-91
	Helix total = -8.2
	Hairpin = 4.7  for closure of 85-90
		Stack = -3.4  for stack of 67-80
		Stack = -2.1  for stack of 68-79
		Stack = -2.1  for stack of 69-78
	Helix total = -7.6
	Hairpin = 3.8  for closure of 70-77
		Stack = -1.4  for stack of 24-36
		Stack = -2.1  for stack of 25-35
		Stack = -3.3  for stack of 26-34
		Stack = -2.4  for stack of 27-33
	Helix total = -9.2
	Hairpin = 5.9  for closure of 28-32


	Total energy = -89.6



