Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    48:64 49:63 50:62 51:61 52:60 148:179 149:178 150:177
	    152:175 204:236 205:235 206:234 207:232 208:231 254:289 255:288
	    257:287 258:286 259:285
	Energy of Broken Structure: -50.7
	Energy of Pseudo-Helices:   -28.9
	Pseudoknot Energy Penalty:  48.4
	Total Free Energy:          -31.2
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-350
		Stack = -1.5  for stack of 2-349
		Stack = -2.1  for stack of 3-348
		Stack = -2.4  for stack of 4-347
		Stack = -1.1  for stack of 5-346
		Stack = -2.1  for stack of 6-345
	Helix total = -12.5
	Multiloop = 6.5  for closure of 7-344
		Stack = -2.1  for stack of 327-343
		Stack = -3.3  for stack of 328-342
		Stack = -2.4  for stack of 329-341
		Stack = -2.1  for stack of 330-340
	Helix total = -9.9
	Hairpin = 4.4  for closure of 331-339
		Stack = -2.4  for stack of 20-323
		Stack = -1.5  for stack of 21-322
		Stack = -0.5  for stack of 22-321
		Stack = -0.5  for stack of 23-320
		Stack = -2.1  for stack of 24-319
		Stack = -2.5  for stack of 25-318
		Stack = -1.5  for stack of 26-317
		Stack = -2.1  for stack of 27-316
	Helix total = -13.1
	Internal/bulge = 2.1  for closure of 28-315	Size = 8
	Helix total = 0.0
	Internal/bulge = -1.4  for closure of 33-310	Size = 2
		Stack = -3.4  for stack of 35-308
		Stack = -2.4  for stack of 36-307
		Stack = -2.4  for stack of 37-306
	Helix total = -8.2
	Internal/bulge = 4.5  for closure of 38-305	Size = 11
		Stack = -2.4  for stack of 43-297
		Stack = -2.4  for stack of 44-296
		Stack = -2.1  for stack of 45-295
		Stack = -2.2  for stack of 46-294
	Helix total = -9.1
	Multiloop = 6.3  for closure of 47-293
		Stack = -2.1  for stack of 241-273
		Stack = -2.5  for stack of 242-272
	Helix total = -4.6
	Internal/bulge = 1.9  for closure of 243-271	Size = 2
	Helix total = 0.0
	Internal/bulge = 1.3  for closure of 245-269	Size = 4
		Stack = -0.9  for stack of 248-266
	Helix total = -0.9
	Internal/bulge = 3.0  for closure of 249-265	Size = 4
	Helix total = 0.0
	Hairpin = 5.4  for closure of 251-261
		Stack = -1.5  for stack of 186-223
		Stack = -2.5  for stack of 187-222
	Helix total = -4.0
	Internal/bulge = 1.1  for closure of 188-221	Size = 3
		Stack = -3.4  for stack of 191-219
		Stack = -1.4  for stack of 192-218
		Stack = -1.3  for stack of 193-217
		Stack = -1.1  for stack of 194-216
		Stack = -1.0  for stack of 195-215
	Helix total = -8.2
	Internal/bulge = 2.5  for closure of 196-214	Size = 1 BP stack across bulge = -1.3
		Stack = -2.2  for stack of 197-212
		Stack = -2.1  for stack of 198-211
		Stack = -1.4  for stack of 199-210
	Helix total = -5.7
	Hairpin = 3.9  for closure of 200-209
		Stack = -2.4  for stack of 130-166
		Stack = -2.5  for stack of 131-165
		Stack = -1.5  for stack of 132-164
		Stack = -2.1  for stack of 133-163
	Helix total = -8.5
	Internal/bulge = 2.3  for closure of 134-162	Size = 1 BP stack across bulge = -0.9
		Stack = -1.0  for stack of 135-160
		Stack = -2.5  for stack of 136-159
		Stack = -3.3  for stack of 137-158
		Stack = -2.1  for stack of 138-157
		Stack = 0.3  for stack of 139-156
		Stack = -1.3  for stack of 140-155
		Stack = -2.1  for stack of 141-154
	Helix total = -12.0
	Hairpin = 5.2  for closure of 142-153
		Stack = -2.1  for stack of 111-126
	Helix total = -2.1
	Internal/bulge = -2.3  for closure of 112-125	Size = 2
	Helix total = 0.0
	Hairpin = 4.1  for closure of 114-123
		Stack = -0.6  for stack of 53-80
		Stack = -2.5  for stack of 54-79
		Stack = -2.4  for stack of 55-78
	Helix total = -5.5
	Internal/bulge = 1.2  for closure of 56-77	Size = 2
		Stack = -2.2  for stack of 58-75
	Helix total = -2.2
	Hairpin = 5.5  for closure of 59-74


	Total energy = -50.7



