Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    57:80 58:79 59:78 60:77 61:76 156:190 157:189 158:188
	    159:187 160:186 161:185 207:241 208:240 209:239 210:238 211:237
	    254:294 255:293 256:292 257:291 259:290 260:289 261:288 262:287
	Energy of Broken Structure: -97.6
	Energy of Pseudo-Helices:   -55.1
	Pseudoknot Energy Penalty:  31.2
	Total Free Energy:          -121.5
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-356
		Stack = -1.5  for stack of 2-355
		Stack = -2.1  for stack of 3-354
		Stack = -3.3  for stack of 4-353
		Stack = -3.4  for stack of 5-352
		Stack = -2.4  for stack of 6-351
	Helix total = -16.0
	Multiloop = 5.1  for closure of 7-350
		Stack = -3.4  for stack of 333-349
		Stack = -2.4  for stack of 334-348
		Stack = -3.3  for stack of 335-347
		Stack = -3.3  for stack of 336-346
	Helix total = -12.4
	Hairpin = 4.4  for closure of 337-345
		Stack = -2.4  for stack of 20-329
	Helix total = -2.4
	Internal/bulge = -2.2  for closure of 21-328	Size = 2
		Stack = -2.4  for stack of 23-326
		Stack = -2.1  for stack of 24-325
		Stack = -3.4  for stack of 25-324
		Stack = -2.4  for stack of 26-323
	Helix total = -10.3
	Internal/bulge = 1.5  for closure of 27-322	Size = 8
		Stack = -1.4  for stack of 33-318
		Stack = -1.4  for stack of 34-317
		Stack = -2.4  for stack of 35-316
		Stack = -3.3  for stack of 36-315
		Stack = -2.4  for stack of 37-314
		Stack = -3.3  for stack of 38-313
	Helix total = -14.2
	Internal/bulge = 1.2  for closure of 39-312	Size = 2
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 41-310	Size = 2
	Helix total = 0.0
	Internal/bulge = 5.1  for closure of 43-308	Size = 6
		Stack = -2.4  for stack of 45-302
		Stack = -2.4  for stack of 46-301
		Stack = -2.1  for stack of 47-300
		Stack = -3.4  for stack of 48-299
	Helix total = -10.3
	Multiloop = 1.9  for closure of 49-298
		Stack = -2.5  for stack of 243-277
		Stack = -3.3  for stack of 244-276
	Helix total = -5.8
	Internal/bulge = 2.3  for closure of 245-275	Size = 4
		Stack = -2.1  for stack of 247-271
		Stack = -2.4  for stack of 248-270
		Stack = -2.1  for stack of 249-269
		Stack = -2.1  for stack of 250-268
		Stack = -3.4  for stack of 251-267
		Stack = -2.4  for stack of 252-266
	Helix total = -14.5
	Hairpin = 5.1  for closure of 253-265
		Stack = -3.3  for stack of 194-223
		Stack = -2.1  for stack of 195-222
		Stack = -1.5  for stack of 196-221
		Stack = -3.3  for stack of 197-220
	Helix total = -10.2
	Internal/bulge = 0.5  for closure of 198-219	Size = 2
		Stack = -1.5  for stack of 200-217
	Helix total = -1.5
	Internal/bulge = -1.4  for closure of 201-216	Size = 2
		Stack = -2.1  for stack of 203-214
		Stack = -1.5  for stack of 204-213
	Helix total = -3.6
	Hairpin = 4.3  for closure of 205-212
		Stack = -2.4  for stack of 142-177
		Stack = -2.5  for stack of 143-176
		Stack = -1.5  for stack of 144-175
		Stack = -2.4  for stack of 145-174
		Stack = -3.3  for stack of 146-173
	Helix total = -12.1
	Internal/bulge = 3.7  for closure of 147-172	Size = 3
		Stack = -1.5  for stack of 148-168
	Helix total = -1.5
	Internal/bulge = 0.5  for closure of 149-167	Size = 2
		Stack = -3.3  for stack of 151-165
	Helix total = -3.3
	Hairpin = 4.4  for closure of 152-164
		Stack = -3.3  for stack of 118-141
		Stack = -3.4  for stack of 119-140
		Stack = -2.1  for stack of 120-139
		Stack = -2.1  for stack of 121-138
		Stack = -3.4  for stack of 122-137
		Stack = -3.3  for stack of 123-136
	Helix total = -17.6
	Hairpin = 4.4  for closure of 124-135
		Stack = -2.4  for stack of 50-68
		Stack = -2.4  for stack of 51-67
		Stack = -2.1  for stack of 52-66
		Stack = -2.2  for stack of 53-65
	Helix total = -9.1
	Hairpin = 6.2  for closure of 54-64


	Total energy = -97.6



