Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    55:79 56:78 57:77 58:76 59:75 150:206 151:205 152:204
	    153:203 154:202 155:201 156:200 220:251 221:250 222:249 223:248
	    224:247 225:246 226:245 257:286 261:283 265:278 266:277 267:276
	Energy of Broken Structure: -81.6
	Energy of Pseudo-Helices:   -42.7
	Pseudoknot Energy Penalty:  32.2
	Total Free Energy:          -92.1
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-368
		Stack = -1.5  for stack of 2-367
		Stack = -2.1  for stack of 3-366
		Stack = -3.4  for stack of 4-365
		Stack = -3.3  for stack of 5-364
		Stack = -2.4  for stack of 6-363
	Helix total = -16.0
	Multiloop = 5.1  for closure of 7-362
		Stack = -3.3  for stack of 345-361
		Stack = -3.3  for stack of 346-360
		Stack = -3.3  for stack of 347-359
		Stack = -3.3  for stack of 348-358
	Helix total = -13.2
	Hairpin = 4.4  for closure of 349-357
		Stack = -2.4  for stack of 20-341
		Stack = -2.5  for stack of 21-340
		Stack = 0.3  for stack of 22-339
		Stack = -0.5  for stack of 23-338
		Stack = -2.1  for stack of 24-337
		Stack = -2.5  for stack of 25-336
	Helix total = -9.7
	Internal/bulge = 2.6  for closure of 26-335	Size = 11
		Stack = -1.3  for stack of 33-329
		Stack = 0.3  for stack of 34-328
		Stack = -2.1  for stack of 35-327
	Helix total = -3.1
	Internal/bulge = 0.5  for closure of 36-326	Size = 1 BP stack across bulge = -3.3
		Stack = -2.2  for stack of 38-325
		Stack = -1.0  for stack of 39-324
		Stack = -2.1  for stack of 40-323
	Helix total = -5.3
	Internal/bulge = 3.3  for closure of 41-322	Size = 7
		Stack = -2.1  for stack of 44-316
		Stack = -1.1  for stack of 45-315
		Stack = -2.1  for stack of 46-314
		Stack = -3.4  for stack of 47-313
	Helix total = -8.7
	Multiloop = 0.6  for closure of 48-312
		Stack = -3.4  for stack of 269-308
		Stack = -2.1  for stack of 270-307
	Helix total = -5.5
	Internal/bulge = 3.0  for closure of 271-306	Size = 3
		Stack = -2.1  for stack of 273-303
		Stack = -2.1  for stack of 274-302
	Helix total = -4.2
	Hairpin = 7.0  for closure of 275-301
		Stack = -2.2  for stack of 209-237
		Stack = -0.9  for stack of 210-236
		Stack = -2.1  for stack of 211-235
	Helix total = -5.2
	Internal/bulge = 0.3  for closure of 212-234	Size = 4
		Stack = -2.4  for stack of 215-231
		Stack = -2.5  for stack of 216-230
		Stack = -1.5  for stack of 217-229
	Helix total = -6.4
	Hairpin = 4.9  for closure of 218-228
		Stack = -2.4  for stack of 136-192
		Stack = -2.2  for stack of 137-191
		Stack = -2.4  for stack of 138-190
		Stack = -2.1  for stack of 139-189
		Stack = -2.4  for stack of 140-188
		Stack = -2.1  for stack of 141-187
	Helix total = -13.6
	Multiloop = 4.8  for closure of 142-186
		Stack = -3.4  for stack of 163-185
		Stack = -3.3  for stack of 164-184
	Helix total = -6.7
	Internal/bulge = 2.4  for closure of 165-183	Size = 7
		Stack = -2.5  for stack of 169-178
		Stack = -3.3  for stack of 170-177
	Helix total = -5.8
	Hairpin = 3.3  for closure of 171-176
		Stack = -2.4  for stack of 144-161
		Stack = -3.3  for stack of 145-160
		Stack = -3.4  for stack of 146-159
	Helix total = -9.1
	Hairpin = 5.1  for closure of 147-158
		Stack = -2.1  for stack of 113-135
		Stack = -2.4  for stack of 114-134
		Stack = -1.4  for stack of 115-133
		Stack = -2.5  for stack of 116-132
		Stack = -3.3  for stack of 117-131
		Stack = -2.4  for stack of 118-130
	Helix total = -14.1
	Hairpin = 5.7  for closure of 119-129
		Stack = -2.4  for stack of 49-66
		Stack = -2.4  for stack of 50-65
		Stack = -2.1  for stack of 51-64
		Stack = -3.4  for stack of 52-63
	Helix total = -10.3
	Hairpin = 4.0  for closure of 53-62


	Total energy = -81.6



