#!/bin/bash

# THIS FILE IS OBSOLETE (cvs has been replaced by git)

# Remove any copy of the RNAstructure repository that might exist.
rm -rf RNAstructure/

# Check out a fresh copy of the RNAstructure repository.
cvs co RNAstructure

# Go into that repository folder.
cd RNAstructure

# Delete all CVS directories.
find . -type d -wholename '*CVS*' | xargs rm -rf 

# Remove Debug and Release directories from RNAstructure/fold.
cd fold;
rm -rf Debug/ Release/
cd ..

# Remove a few subdirectories from PARTS.
cd PARTS;
cd src;
rm -rf lib/ phmm/ parts/frag_aln_enum parts/map parts/mem_tracker
cd ..
