Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    49:69 50:68 51:67 52:66 195:231 197:229 198:228 199:227
	    200:226 201:225 202:224 248:290 249:289 250:288 251:287 252:286
	    253:285 254:284 255:283
	Energy of Broken Structure: -17.2
	Energy of Pseudo-Helices:   -26.0
	Pseudoknot Energy Penalty:  28.1
	Total Free Energy:          -15.1
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 1-349	Size = 2
	Helix total = 0.0
	Internal/bulge = 1.5  for closure of 3-347	Size = 4
	Helix total = 0.0
	Multiloop = 6.3  for closure of 6-344
		Stack = -2.5  for stack of 327-343
		Stack = 0.3  for stack of 328-342
		Stack = -2.1  for stack of 329-341
		Stack = -3.3  for stack of 330-340
	Helix total = -7.6
	Hairpin = 4.4  for closure of 331-339
		Stack = -1.3  for stack of 17-325
		Stack = -0.5  for stack of 18-324
		Stack = -0.6  for stack of 19-323
	Helix total = -2.4
	Internal/bulge = 2.3  for closure of 20-322	Size = 4
		Stack = -0.5  for stack of 23-319
		Stack = -1.3  for stack of 24-318
	Helix total = -1.8
	Internal/bulge = 1.9  for closure of 25-317	Size = 2
	Helix total = 0.0
	Internal/bulge = 3.9  for closure of 27-315	Size = 8
		Stack = -2.4  for stack of 33-311
		Stack = -3.3  for stack of 34-310
		Stack = -2.1  for stack of 35-309
		Stack = -2.1  for stack of 36-308
		Stack = -1.5  for stack of 37-307
	Helix total = -11.4
	Internal/bulge = 1.9  for closure of 38-306	Size = 2
	Helix total = 0.0
	Internal/bulge = 3.9  for closure of 40-304	Size = 8
		Stack = -1.4  for stack of 44-298
		Stack = -3.3  for stack of 45-297
		Stack = -3.3  for stack of 46-296
	Helix total = -8.0
	Multiloop = 5.6  for closure of 47-295
		Stack = -2.5  for stack of 233-267
		Stack = -0.6  for stack of 234-266
		Stack = -1.3  for stack of 235-265
	Helix total = -4.4
	Internal/bulge = 3.8  for closure of 236-264	Size = 2
		Stack = -0.6  for stack of 239-263
		Stack = -2.1  for stack of 240-262
		Stack = -3.4  for stack of 241-261
		Stack = -2.1  for stack of 242-260
		Stack = -2.2  for stack of 243-259
	Helix total = -10.4
	Hairpin = 5.8  for closure of 244-258
		Stack = -2.4  for stack of 185-213
		Stack = -3.4  for stack of 186-212
		Stack = -3.3  for stack of 187-211
		Stack = -3.3  for stack of 188-210
		Stack = -2.1  for stack of 189-209
		Stack = -2.1  for stack of 190-208
		Stack = -2.2  for stack of 191-207
		Stack = -1.3  for stack of 192-206
		Stack = 0.3  for stack of 193-205
	Helix total = -19.8
	Hairpin = 6.3  for closure of 194-204
		Stack = -0.5  for stack of 148-167
		Stack = 1.3  for stack of 149-166
		Stack = -1.5  for stack of 150-165
		Stack = -2.1  for stack of 151-164
		Stack = -2.1  for stack of 152-163
	Helix total = -4.9
	Hairpin = 5.0  for closure of 153-162
	Helix total = 0.0
	Internal/bulge = 0.7  for closure of 118-147	Size = 4
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 121-144	Size = 4
		Stack = -1.3  for stack of 124-141
		Stack = 0.3  for stack of 125-140
		Stack = -2.5  for stack of 126-139
	Helix total = -3.5
	Hairpin = 5.5  for closure of 127-138
		Stack = -3.3  for stack of 55-84
		Stack = -3.3  for stack of 56-83
		Stack = -2.1  for stack of 57-82
		Stack = -0.6  for stack of 58-81
	Helix total = -9.3
	Hairpin = 6.1  for closure of 59-80


	Total energy = -17.2



