Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    49:69 50:68 51:67 52:66 164:198 165:197 166:196 167:195
	    168:194 169:193 213:248 214:247 215:246 216:245 217:244 218:243
	    219:242 220:241 265:307 266:306 267:305 268:304 269:303 270:302
	    271:301 272:300
	Energy of Broken Structure: -74.9
	Energy of Pseudo-Helices:   -46.1
	Pseudoknot Energy Penalty:  32.3
	Total Free Energy:          -88.7
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-367
		Stack = -1.5  for stack of 2-366
		Stack = -2.1  for stack of 3-365
		Stack = -2.4  for stack of 4-364
		Stack = -1.1  for stack of 5-363
		Stack = -2.1  for stack of 6-362
	Helix total = -12.5
	Multiloop = 5.0  for closure of 7-361
		Stack = -3.4  for stack of 344-360
		Stack = -2.4  for stack of 345-359
		Stack = -3.3  for stack of 346-358
		Stack = -3.3  for stack of 347-357
	Helix total = -12.4
	Hairpin = 4.4  for closure of 348-356
		Stack = -2.1  for stack of 19-340
		Stack = -0.9  for stack of 20-339
		Stack = -2.1  for stack of 21-338
		Stack = -1.5  for stack of 22-337
		Stack = -1.3  for stack of 23-336
		Stack = -0.9  for stack of 24-335
	Helix total = -8.8
	Internal/bulge = 1.9  for closure of 25-334	Size = 2
	Helix total = 0.0
	Internal/bulge = 3.9  for closure of 27-332	Size = 8
		Stack = -2.4  for stack of 33-328
		Stack = -3.3  for stack of 34-327
		Stack = -2.1  for stack of 35-326
		Stack = -2.1  for stack of 36-325
		Stack = -1.5  for stack of 37-324
	Helix total = -11.4
	Internal/bulge = 1.9  for closure of 38-323	Size = 2
	Helix total = 0.0
	Internal/bulge = 3.2  for closure of 40-321	Size = 8
		Stack = -2.4  for stack of 44-315
		Stack = -3.3  for stack of 45-314
		Stack = -3.3  for stack of 46-313
		Stack = -3.4  for stack of 47-312
	Helix total = -12.4
	Multiloop = 2.9  for closure of 48-311
		Stack = -3.3  for stack of 249-285
		Stack = -3.4  for stack of 250-284
		Stack = -2.1  for stack of 251-283
		Stack = -1.3  for stack of 252-282
	Helix total = -10.1
	Internal/bulge = 3.3  for closure of 253-281	Size = 2
		Stack = -2.1  for stack of 256-280
		Stack = -2.1  for stack of 257-279
		Stack = -3.4  for stack of 258-278
		Stack = -2.1  for stack of 259-277
		Stack = -2.2  for stack of 260-276
	Helix total = -11.9
	Hairpin = 5.8  for closure of 261-275
		Stack = -2.4  for stack of 203-231
		Stack = -2.2  for stack of 204-230
		Stack = -1.3  for stack of 205-229
		Stack = -2.2  for stack of 206-228
		Stack = -2.1  for stack of 207-227
		Stack = -2.1  for stack of 208-226
		Stack = -3.4  for stack of 209-225
		Stack = -2.1  for stack of 210-224
	Helix total = -17.8
	Hairpin = 5.5  for closure of 211-223
		Stack = -2.5  for stack of 149-184
		Stack = -1.5  for stack of 150-183
		Stack = -2.1  for stack of 151-182
		Stack = -2.1  for stack of 152-181
	Helix total = -8.2
	Internal/bulge = 2.3  for closure of 153-180	Size = 4
		Stack = -3.3  for stack of 155-176
		Stack = -2.4  for stack of 156-175
		Stack = -3.3  for stack of 157-174
		Stack = -2.4  for stack of 158-173
		Stack = -1.4  for stack of 159-172
	Helix total = -12.8
	Hairpin = 6.2  for closure of 160-171
		Stack = -0.5  for stack of 117-148
	Helix total = -0.5
	Internal/bulge = 0.7  for closure of 118-147	Size = 4
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 121-144	Size = 4
		Stack = -2.4  for stack of 124-141
		Stack = -1.4  for stack of 125-140
		Stack = -2.5  for stack of 126-139
	Helix total = -6.3
	Hairpin = 5.5  for closure of 127-138
		Stack = -3.3  for stack of 56-83
		Stack = -2.1  for stack of 57-82
		Stack = -0.6  for stack of 58-81
		Stack = -2.1  for stack of 59-80
	Helix total = -8.1
	Hairpin = 5.6  for closure of 60-79


	Total energy = -74.9



