Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    59:77 61:75 62:74 63:73 64:72
	Energy of Broken Structure: -25.7
	Energy of Pseudo-Helices:   -3.3
	Pseudoknot Energy Penalty:  6.8
	Total Free Energy:          -22.2
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-319
		Stack = -1.5  for stack of 2-318
		Stack = -2.1  for stack of 3-317
		Stack = -3.4  for stack of 4-316
		Stack = -2.1  for stack of 5-315
		Stack = -2.1  for stack of 6-314
	Helix total = -14.5
	Multiloop = 6.0  for closure of 7-313
		Stack = -2.2  for stack of 296-312
		Stack = -2.1  for stack of 297-311
		Stack = -3.3  for stack of 298-310
		Stack = -3.3  for stack of 299-309
	Helix total = -10.9
	Hairpin = 4.4  for closure of 300-308
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 17-294	Size = 2
		Stack = -2.1  for stack of 19-292
		Stack = -1.1  for stack of 20-291
		Stack = -0.9  for stack of 21-290
		Stack = -2.1  for stack of 22-289
		Stack = -2.2  for stack of 23-288
		Stack = -1.0  for stack of 24-287
		Stack = -1.3  for stack of 25-286
		Stack = -0.9  for stack of 26-285
		Stack = -0.9  for stack of 27-284
		Stack = -0.9  for stack of 28-283
	Helix total = -13.4
	Internal/bulge = 4.9  for closure of 29-282	Size = 8
		Stack = -0.9  for stack of 33-276
		Stack = -0.9  for stack of 34-275
		Stack = -1.1  for stack of 35-274
		Stack = -1.3  for stack of 36-273
		Stack = -1.4  for stack of 37-272
	Helix total = -5.6
	Multiloop = 9.2  for closure of 38-271
		Stack = -2.2  for stack of 245-268
		Stack = -3.3  for stack of 246-267
		Stack = -2.1  for stack of 247-266
	Helix total = -7.6
	Internal/bulge = 2.4  for closure of 248-265	Size = 1 BP stack across bulge = -1.0
		Stack = -1.3  for stack of 249-263
		Stack = -0.9  for stack of 250-262
		Stack = -1.1  for stack of 251-261
		Stack = -0.9  for stack of 252-260
		Stack = -2.1  for stack of 253-259
	Helix total = -6.3
	Hairpin = 5.4  for closure of 254-258
		Stack = -0.9  for stack of 47-242
		Stack = -0.9  for stack of 48-241
		Stack = -0.9  for stack of 49-240
		Stack = -2.2  for stack of 50-239
	Helix total = -4.9
	Internal/bulge = 8.4  for closure of 51-238	Size = 167
		Stack = -1.3  for stack of 52-70
		Stack = -2.1  for stack of 53-69
		Stack = -3.4  for stack of 54-68
		Stack = -2.1  for stack of 55-67
	Helix total = -8.9
	Hairpin = 6.2  for closure of 56-66


	Total energy = -25.7



