Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    193:241 195:240 197:238 198:237 199:236
	Energy of Broken Structure: -72.5
	Energy of Pseudo-Helices:   -4.2
	Pseudoknot Energy Penalty:  8.0
	Total Free Energy:          -68.7
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.8
		Stack = -0.9  for stack of 242-336
		Stack = -0.9  for stack of 243-335
		Stack = -2.2  for stack of 244-334
		Stack = -2.1  for stack of 245-333
		Stack = -0.9  for stack of 246-332
	Helix total = -7.0
	Multiloop = 6.8  for closure of 247-331
		Stack = -2.5  for stack of 307-330
		Stack = -2.1  for stack of 308-329
		Stack = -0.9  for stack of 309-328
		Stack = -1.3  for stack of 310-327
		Stack = -1.1  for stack of 311-326
		Stack = -0.9  for stack of 312-325
		Stack = -1.3  for stack of 313-324
		Stack = -1.1  for stack of 314-323
	Helix total = -11.2
	Hairpin = 5.4  for closure of 315-322
		Stack = -1.3  for stack of 279-306
		Stack = -2.1  for stack of 280-305
		Stack = -2.4  for stack of 281-304
		Stack = -0.9  for stack of 282-303
		Stack = -1.1  for stack of 283-302
		Stack = -1.3  for stack of 284-301
	Helix total = -9.1
	Hairpin = 5.7  for closure of 285-300
		Stack = -0.9  for stack of 248-278
		Stack = -1.0  for stack of 249-277
		Stack = -2.1  for stack of 250-276
		Stack = -2.2  for stack of 251-275
		Stack = -0.9  for stack of 252-274
		Stack = -1.3  for stack of 253-273
		Stack = -0.6  for stack of 254-272
		Stack = -0.5  for stack of 255-271
		Stack = -1.4  for stack of 256-270
		Stack = -2.1  for stack of 257-269
	Helix total = -13.0
	Hairpin = 5.9  for closure of 258-268
		Stack = -0.5  for stack of 210-229
		Stack = -2.1  for stack of 211-228
		Stack = -2.5  for stack of 212-227
		Stack = 0.3  for stack of 213-226
		Stack = -2.1  for stack of 214-225
		Stack = -3.4  for stack of 215-224
	Helix total = -10.3
	Hairpin = 3.3  for closure of 216-223
		Stack = -1.4  for stack of 131-209
		Stack = -0.9  for stack of 132-208
		Stack = -1.3  for stack of 133-207
		Stack = -2.1  for stack of 134-206
		Stack = -2.2  for stack of 135-205
		Stack = -2.1  for stack of 136-204
	Helix total = -10.0
	Multiloop = 6.7  for closure of 137-203
		Stack = -2.4  for stack of 172-189
		Stack = -1.5  for stack of 173-188
		Stack = -1.4  for stack of 174-187
		Stack = -1.3  for stack of 175-186
		Stack = -1.0  for stack of 176-185
		Stack = -1.1  for stack of 177-184
	Helix total = -8.7
	Hairpin = 5.1  for closure of 178-183
		Stack = -2.2  for stack of 141-171
		Stack = -2.4  for stack of 142-170
		Stack = -2.4  for stack of 143-169
		Stack = -1.1  for stack of 144-168
		Stack = -2.4  for stack of 145-167
	Helix total = -10.5
	Internal/bulge = 2.6  for closure of 146-166	Size = 5
		Stack = -2.4  for stack of 150-163
		Stack = -0.9  for stack of 151-162
		Stack = -2.1  for stack of 152-161
		Stack = -2.2  for stack of 153-160
	Helix total = -7.6
	Hairpin = 5.4  for closure of 154-159
		Stack = -1.3  for stack of 104-124
		Stack = -0.9  for stack of 105-123
		Stack = -1.1  for stack of 106-122
		Stack = -1.3  for stack of 107-121
		Stack = -0.6  for stack of 108-120
		Stack = -1.4  for stack of 109-119
		Stack = -2.4  for stack of 110-118
	Helix total = -9.0
	Hairpin = 3.6  for closure of 111-117
		Stack = -1.3  for stack of 84-103
		Stack = -1.1  for stack of 85-102
		Stack = -1.3  for stack of 86-101
		Stack = -1.1  for stack of 87-100
		Stack = -2.4  for stack of 88-99
		Stack = -3.3  for stack of 89-98
		Stack = -3.3  for stack of 90-97
	Helix total = -13.8
	Hairpin = 3.3  for closure of 91-96
		Stack = -0.9  for stack of 42-76
		Stack = -1.1  for stack of 43-75
		Stack = -2.4  for stack of 44-74
		Stack = -2.1  for stack of 45-73
		Stack = -0.9  for stack of 46-72
		Stack = -0.9  for stack of 47-71
		Stack = -0.9  for stack of 48-70
		Stack = -0.9  for stack of 49-69
	Helix total = -10.1
	Hairpin = 5.6  for closure of 50-68
		Stack = -1.1  for stack of 23-34
		Stack = -2.1  for stack of 24-33
		Stack = -3.3  for stack of 25-32
	Helix total = -6.5
	Hairpin = 5.6  for closure of 26-31
		Stack = -2.1  for stack of 1-20
		Stack = -3.3  for stack of 2-19
		Stack = -3.3  for stack of 3-18
		Stack = -2.5  for stack of 4-17
		Stack = -0.6  for stack of 5-16
		Stack = -1.3  for stack of 6-15
		Stack = -1.1  for stack of 7-14
	Helix total = -14.2
	Hairpin = 5.3  for closure of 8-13


	Total energy = -72.5



