Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    220:269 222:268 223:267 224:266 225:265 226:264
	Energy of Broken Structure: -36.9
	Energy of Pseudo-Helices:   -8.0
	Pseudoknot Energy Penalty:  8.0
	Total Free Energy:          -36.9
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -5.4
		Stack = -2.2  for stack of 271-321
	Helix total = -2.2
	Multiloop = 10.1  for closure of 272-320
		Stack = -2.4  for stack of 289-315
		Stack = -2.1  for stack of 290-314
		Stack = -0.9  for stack of 291-313
		Stack = -1.3  for stack of 292-312
		Stack = -2.1  for stack of 293-311
		Stack = -3.3  for stack of 294-310
	Helix total = -12.1
	Hairpin = 5.7  for closure of 295-309
		Stack = -2.5  for stack of 274-288
		Stack = -3.3  for stack of 275-287
		Stack = -2.1  for stack of 276-286
		Stack = -2.1  for stack of 277-285
	Helix total = -10.0
	Hairpin = 3.5  for closure of 278-284
		Stack = -2.1  for stack of 238-255
		Stack = -1.1  for stack of 239-254
		Stack = -0.9  for stack of 240-253
		Stack = -1.3  for stack of 241-252
		Stack = -2.1  for stack of 242-251
		Stack = -2.2  for stack of 243-250
	Helix total = -9.7
	Hairpin = 5.4  for closure of 244-249
		Stack = -0.9  for stack of 43-236
		Stack = -2.1  for stack of 44-235
		Stack = -2.4  for stack of 45-234
		Stack = -0.6  for stack of 46-233
		Stack = -2.5  for stack of 47-232
		Stack = -3.3  for stack of 48-231
	Helix total = -11.8
	Multiloop = 8.3  for closure of 49-230
		Stack = -2.4  for stack of 179-216
	Helix total = -2.4
	Internal/bulge = 1.9  for closure of 180-215	Size = 10
		Stack = -2.1  for stack of 186-209
		Stack = -0.6  for stack of 187-208
		Stack = -1.4  for stack of 188-207
		Stack = -1.3  for stack of 189-206
		Stack = -0.9  for stack of 190-205
		Stack = -1.1  for stack of 191-204
	Helix total = -7.4
	Hairpin = 6.0  for closure of 192-203
		Stack = -2.4  for stack of 54-178
		Stack = -3.3  for stack of 55-177
		Stack = -2.1  for stack of 56-176
	Helix total = -7.8
	Internal/bulge = 3.7  for closure of 57-175	Size = 3
	Helix total = 0.0
	Internal/bulge = 2.4  for closure of 59-172	Size = 7
		Stack = -3.3  for stack of 64-168
		Stack = -3.3  for stack of 65-167
	Helix total = -6.6
	Multiloop = 5.1  for closure of 66-166
		Stack = -0.9  for stack of 150-163
		Stack = -2.4  for stack of 151-162
		Stack = -2.1  for stack of 152-161
		Stack = -1.3  for stack of 153-160
	Helix total = -6.7
	Hairpin = 4.4  for closure of 154-159
		Stack = -2.1  for stack of 72-148
		Stack = -2.4  for stack of 73-147
		Stack = -2.1  for stack of 74-146
		Stack = -1.3  for stack of 75-145
		Stack = -0.9  for stack of 76-144
		Stack = -1.1  for stack of 77-143
	Helix total = -9.9
	Internal/bulge = 2.1  for closure of 78-142	Size = 1 BP stack across bulge = -1.3
	Helix total = 0.0
	Internal/bulge = 4.6  for closure of 79-140	Size = 4
		Stack = -2.2  for stack of 80-135
		Stack = -2.1  for stack of 81-134
	Helix total = -4.3
	Multiloop = 6.4  for closure of 82-133
		Stack = -3.3  for stack of 111-128
		Stack = -2.1  for stack of 112-127
		Stack = -2.4  for stack of 113-126
		Stack = -2.1  for stack of 114-125
	Helix total = -9.9
	Hairpin = 4.3  for closure of 115-124
		Stack = -2.1  for stack of 85-108
	Helix total = -2.1
	Internal/bulge = 1.2  for closure of 86-107	Size = 2
		Stack = -1.3  for stack of 88-105
		Stack = -0.9  for stack of 89-104
		Stack = -2.1  for stack of 90-103
		Stack = -2.4  for stack of 91-102
	Helix total = -6.7
	Internal/bulge = 1.2  for closure of 92-101	Size = 2
	Helix total = 0.0
	Hairpin = 3.1  for closure of 94-99
		Stack = -0.9  for stack of 1-41
		Stack = -2.2  for stack of 2-40
		Stack = -2.1  for stack of 3-39
		Stack = -1.4  for stack of 4-38
		Stack = -1.0  for stack of 5-37
		Stack = -0.9  for stack of 6-36
	Helix total = -8.5
	Hairpin = 7.2  for closure of 7-35


	Total energy = -36.9



