Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    275:335 277:334 278:333 279:332 280:331 281:330
	Energy of Broken Structure: -79.5
	Energy of Pseudo-Helices:   -8.0
	Pseudoknot Energy Penalty:  8.0
	Total Free Energy:          -79.5
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -7.4
		Stack = 1.3  for stack of 336-366
	Helix total = 1.3
	Internal/bulge = 6.1  for closure of 337-365	Size = 9
		Stack = -2.1  for stack of 339-356
		Stack = -0.6  for stack of 340-355
		Stack = -1.3  for stack of 341-354
		Stack = -0.6  for stack of 342-353
		Stack = -2.4  for stack of 343-352
		Stack = -2.1  for stack of 344-351
	Helix total = -9.1
	Hairpin = 4.1  for closure of 345-350
		Stack = -2.5  for stack of 293-321
		Stack = -1.0  for stack of 294-320
		Stack = -2.2  for stack of 295-319
		Stack = -2.1  for stack of 296-318
		Stack = -1.0  for stack of 297-317
		Stack = -2.5  for stack of 298-316
		Stack = -2.1  for stack of 299-315
		Stack = -2.4  for stack of 300-314
	Helix total = -15.8
	Hairpin = 4.5  for closure of 301-313
		Stack = -2.1  for stack of 83-291
		Stack = -2.2  for stack of 84-290
		Stack = -2.1  for stack of 85-289
		Stack = -2.1  for stack of 86-288
		Stack = -2.5  for stack of 87-287
		Stack = -1.5  for stack of 88-286
	Helix total = -12.5
	Multiloop = 8.8  for closure of 89-285
		Stack = -2.5  for stack of 214-271
	Helix total = -2.5
	Internal/bulge = 1.7  for closure of 215-270	Size = 6
		Stack = -1.1  for stack of 219-266
		Stack = -2.4  for stack of 220-265
		Stack = -3.3  for stack of 221-264
	Helix total = -6.8
	Internal/bulge = 2.1  for closure of 222-263	Size = 7
		Stack = -3.3  for stack of 227-259
		Stack = -1.5  for stack of 228-258
	Helix total = -4.8
	Hairpin = 5.5  for closure of 229-257
		Stack = -2.1  for stack of 94-213
		Stack = -3.4  for stack of 95-212
		Stack = -2.4  for stack of 96-211
		Stack = -3.3  for stack of 97-210
		Stack = -1.5  for stack of 98-209
	Helix total = -12.7
	Internal/bulge = 2.4  for closure of 99-208	Size = 7
		Stack = -3.3  for stack of 104-204
		Stack = -3.3  for stack of 105-203
	Helix total = -6.6
	Internal/bulge = 5.5  for closure of 106-202	Size = 20
		Stack = -3.3  for stack of 113-187
		Stack = -2.1  for stack of 114-186
		Stack = -0.9  for stack of 115-185
		Stack = -1.3  for stack of 116-184
		Stack = -1.4  for stack of 117-183
		Stack = -0.6  for stack of 118-182
	Helix total = -9.6
	Internal/bulge = 1.4  for closure of 119-181	Size = 1 BP stack across bulge = -2.4
	Helix total = 0.0
	Internal/bulge = 4.1  for closure of 120-179	Size = 4
		Stack = -2.2  for stack of 121-174
		Stack = -3.3  for stack of 122-173
	Helix total = -5.5
	Multiloop = 5.4  for closure of 123-172
		Stack = -3.3  for stack of 150-167
	Helix total = -3.3
	Internal/bulge = 1.7  for closure of 151-166	Size = 1 BP stack across bulge = -2.1
		Stack = -2.1  for stack of 152-164
		Stack = -3.3  for stack of 153-163
		Stack = -2.5  for stack of 154-162
		Stack = -0.6  for stack of 155-161
	Helix total = -8.5
	Hairpin = 5.9  for closure of 156-160
		Stack = -2.5  for stack of 126-147
		Stack = -2.1  for stack of 127-146
		Stack = -0.9  for stack of 128-145
	Helix total = -5.5
	Internal/bulge = 1.0  for closure of 129-144	Size = 4
		Stack = -2.2  for stack of 132-141
		Stack = -2.1  for stack of 133-140
	Helix total = -4.3
	Hairpin = 3.1  for closure of 134-139
		Stack = -2.5  for stack of 50-80
		Stack = 0.3  for stack of 51-79
		Stack = -2.1  for stack of 52-78
		Stack = -2.2  for stack of 53-77
		Stack = -2.4  for stack of 54-76
		Stack = -2.1  for stack of 55-75
		Stack = -0.9  for stack of 56-74
		Stack = -0.6  for stack of 57-73
		Stack = -1.4  for stack of 58-72
		Stack = -1.3  for stack of 59-71
		Stack = 0.3  for stack of 60-70
		Stack = -2.1  for stack of 61-69
		Stack = -1.5  for stack of 62-68
	Helix total = -18.5
	Hairpin = 3.7  for closure of 63-67
		Stack = -2.1  for stack of 28-48
		Stack = -3.4  for stack of 29-47
		Stack = -2.1  for stack of 30-46
		Stack = -0.6  for stack of 31-45
	Helix total = -8.2
	Internal/bulge = 0.7  for closure of 32-44	Size = 1 BP stack across bulge = -2.5
		Stack = -2.4  for stack of 33-42
		Stack = -2.2  for stack of 34-41
	Helix total = -4.6
	Hairpin = 4.1  for closure of 35-40
		Stack = -1.1  for stack of 1-24
		Stack = -2.1  for stack of 2-23
		Stack = -2.4  for stack of 3-22
		Stack = -2.2  for stack of 4-21
		Stack = -2.1  for stack of 5-20
		Stack = -1.5  for stack of 6-19
	Helix total = -11.4
	Hairpin = 5.0  for closure of 7-18


	Total energy = -79.5



