Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    49:67 50:66 51:65 52:64 53:63 157:197 158:196 159:195
	    160:194 161:193 216:249 217:248 218:247 219:246 220:245 221:244
	    252:287 253:286 254:285 263:276 264:275 265:274
	Energy of Broken Structure: -71.6
	Energy of Pseudo-Helices:   -36.1
	Pseudoknot Energy Penalty:  32.1
	Total Free Energy:          -75.6
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-364
		Stack = -1.5  for stack of 2-363
		Stack = -2.1  for stack of 3-362
		Stack = -3.4  for stack of 4-361
		Stack = -2.1  for stack of 5-360
		Stack = -2.1  for stack of 6-359
	Helix total = -14.5
	Multiloop = 5.2  for closure of 7-358
		Stack = -3.4  for stack of 341-357
		Stack = -2.4  for stack of 342-356
		Stack = -3.3  for stack of 343-355
		Stack = -3.3  for stack of 344-354
	Helix total = -12.4
	Hairpin = 4.4  for closure of 345-353
		Stack = -2.1  for stack of 21-337
		Stack = -0.6  for stack of 22-336
		Stack = -2.1  for stack of 23-335
		Stack = -2.4  for stack of 24-334
	Helix total = -7.2
	Internal/bulge = 1.2  for closure of 25-333	Size = 2
		Stack = -2.1  for stack of 27-331
		Stack = -0.9  for stack of 28-330
	Helix total = -3.0
	Internal/bulge = 1.4  for closure of 29-329	Size = 6
		Stack = -0.5  for stack of 33-325
		Stack = -2.5  for stack of 34-324
		Stack = -2.1  for stack of 35-323
	Helix total = -5.1
	Internal/bulge = 1.5  for closure of 36-322	Size = 6
		Stack = -3.3  for stack of 40-318
	Helix total = -3.3
	Internal/bulge = -0.1  for closure of 41-317	Size = 2
	Helix total = 0.0
	Internal/bulge = 3.2  for closure of 43-315	Size = 3
		Stack = -2.1  for stack of 44-311
		Stack = -1.1  for stack of 45-310
		Stack = -2.1  for stack of 46-309
		Stack = -3.4  for stack of 47-308
	Helix total = -8.7
	Multiloop = 3.0  for closure of 48-307
		Stack = -2.2  for stack of 267-303
		Stack = -2.4  for stack of 268-302
		Stack = -2.1  for stack of 269-301
		Stack = -1.0  for stack of 270-300
		Stack = -1.4  for stack of 271-299
		Stack = -1.3  for stack of 272-298
	Helix total = -10.4
	Hairpin = 7.2  for closure of 273-297
		Stack = -3.4  for stack of 201-233
		Stack = -2.4  for stack of 202-232
	Helix total = -5.8
	Internal/bulge = 2.7  for closure of 203-231	Size = 9
		Stack = -2.2  for stack of 209-226
		Stack = -3.3  for stack of 210-225
		Stack = -2.1  for stack of 211-224
		Stack = -1.3  for stack of 212-223
	Helix total = -8.9
	Hairpin = 5.3  for closure of 213-222
		Stack = -2.2  for stack of 138-182
		Stack = -2.1  for stack of 139-181
		Stack = -0.9  for stack of 140-180
		Stack = -2.4  for stack of 141-179
		Stack = -2.1  for stack of 142-178
		Stack = -1.3  for stack of 143-177
	Helix total = -11.0
	Internal/bulge = 4.5  for closure of 144-176	Size = 5
		Stack = -3.3  for stack of 145-170
		Stack = -3.3  for stack of 146-169
		Stack = -2.1  for stack of 147-168
	Helix total = -8.7
	Internal/bulge = 0.7  for closure of 148-167	Size = 4
		Stack = -2.1  for stack of 151-164
		Stack = -0.9  for stack of 152-163
	Helix total = -3.0
	Hairpin = 5.5  for closure of 153-162
		Stack = -3.4  for stack of 109-137
	Helix total = -3.4
	Internal/bulge = -0.4  for closure of 110-136	Size = 2
		Stack = -2.1  for stack of 112-134
	Helix total = -2.1
	Internal/bulge = 1.2  for closure of 113-133	Size = 2
		Stack = -3.4  for stack of 115-131
		Stack = -2.1  for stack of 116-130
		Stack = -2.1  for stack of 117-129
	Helix total = -7.6
	Hairpin = 5.7  for closure of 118-128
		Stack = -3.4  for stack of 55-78
		Stack = -2.4  for stack of 56-77
		Stack = -3.3  for stack of 57-76
		Stack = -2.5  for stack of 58-75
		Stack = -0.6  for stack of 59-74
	Helix total = -12.2
	Hairpin = 5.2  for closure of 60-73


	Total energy = -71.6



