Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    47:67 48:66 49:65 50:64 51:63 200:236 206:230 254:293
	    255:292 256:291 257:290 258:289 260:287
	Energy of Broken Structure: -22.9
	Energy of Pseudo-Helices:   -18.7
	Pseudoknot Energy Penalty:  23.8
	Total Free Energy:          -17.8
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-354
		Stack = -1.5  for stack of 2-353
		Stack = -2.1  for stack of 3-352
		Stack = -3.3  for stack of 4-351
		Stack = -2.2  for stack of 5-350
		Stack = -2.1  for stack of 6-349
	Helix total = -14.5
	Multiloop = 5.1  for closure of 7-348
		Stack = -3.4  for stack of 331-347
		Stack = -2.4  for stack of 332-346
		Stack = -3.3  for stack of 333-345
		Stack = -3.3  for stack of 334-344
	Helix total = -12.4
	Hairpin = 4.4  for closure of 335-343
		Stack = -2.4  for stack of 20-327
		Stack = -1.5  for stack of 21-326
		Stack = -0.5  for stack of 22-325
		Stack = -0.5  for stack of 23-324
		Stack = -1.3  for stack of 24-323
		Stack = -1.1  for stack of 25-322
		Stack = -1.3  for stack of 26-321
	Helix total = -8.6
	Internal/bulge = 1.7  for closure of 27-320	Size = 8
		Stack = -2.5  for stack of 32-315
		Stack = -1.4  for stack of 33-314
	Helix total = -3.9
	Internal/bulge = 3.7  for closure of 34-313	Size = 3
		Stack = -2.1  for stack of 36-310
		Stack = -3.3  for stack of 37-309
		Stack = -2.5  for stack of 38-308
	Helix total = -7.9
	Internal/bulge = 3.6  for closure of 39-307	Size = 7
		Stack = -2.1  for stack of 42-301
		Stack = -1.1  for stack of 43-300
		Stack = -2.1  for stack of 44-299
		Stack = -3.4  for stack of 45-298
	Helix total = -8.7
	Multiloop = 5.7  for closure of 46-297
		Stack = -2.1  for stack of 240-274
		Stack = -1.4  for stack of 241-273
	Helix total = -3.5
	Internal/bulge = 3.2  for closure of 242-272	Size = 15
		Stack = -2.4  for stack of 250-263
		Stack = -3.3  for stack of 251-262
	Helix total = -5.7
	Hairpin = 4.5  for closure of 252-261
	Helix total = 0.0
	Internal/bulge = 2.1  for closure of 185-219	Size = 12
		Stack = 1.3  for stack of 192-212
		Stack = -0.5  for stack of 193-211
	Helix total = 0.8
	Internal/bulge = 1.2  for closure of 194-210	Size = 2
		Stack = -2.4  for stack of 196-208
	Helix total = -2.4
	Hairpin = 4.9  for closure of 197-207
		Stack = -0.6  for stack of 145-168
	Helix total = -0.6
	Internal/bulge = 1.9  for closure of 146-167	Size = 2
	Helix total = 0.0
	Hairpin = 6.8  for closure of 148-165
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 114-142	Size = 2
		Stack = -2.2  for stack of 116-140
	Helix total = -2.2
	Internal/bulge = 1.2  for closure of 117-139	Size = 2
		Stack = -2.1  for stack of 119-137
	Helix total = -2.1
	Internal/bulge = 1.1  for closure of 120-136	Size = 4
	Helix total = 0.0
	Hairpin = 6.2  for closure of 123-133
		Stack = -3.4  for stack of 54-80
		Stack = -3.3  for stack of 55-79
		Stack = -2.1  for stack of 56-78
		Stack = -2.1  for stack of 57-77
		Stack = -2.2  for stack of 58-76
		Stack = -0.9  for stack of 59-75
	Helix total = -14.0
	Hairpin = 5.3  for closure of 60-74


	Total energy = -22.9



