Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    47:67 48:66 49:65 50:64 51:63 197:232 198:231 199:230
	    200:229 201:228 202:227 252:286 253:285 254:284 255:283 256:282
	    306:339 307:338 308:337 309:336 310:335 311:334 312:333
	Energy of Broken Structure: -62.4
	Energy of Pseudo-Helices:   -41.8
	Pseudoknot Energy Penalty:  33.1
	Total Free Energy:          -71.1
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-401
		Stack = -1.5  for stack of 2-400
		Stack = -2.1  for stack of 3-399
		Stack = -3.3  for stack of 4-398
		Stack = -2.2  for stack of 5-397
		Stack = -2.1  for stack of 6-396
	Helix total = -14.5
	Multiloop = 5.1  for closure of 7-395
		Stack = -2.4  for stack of 378-394
		Stack = -2.1  for stack of 379-393
		Stack = -2.4  for stack of 380-392
		Stack = -2.1  for stack of 381-391
	Helix total = -9.0
	Hairpin = 4.4  for closure of 382-390
		Stack = -2.1  for stack of 20-374
	Helix total = -2.1
	Internal/bulge = 1.2  for closure of 21-373	Size = 2
		Stack = -3.3  for stack of 23-371
	Helix total = -3.3
	Internal/bulge = 1.2  for closure of 24-370	Size = 2
	Helix total = 0.0
	Internal/bulge = 2.6  for closure of 26-368	Size = 1 BP stack across bulge = -0.6
		Stack = -1.4  for stack of 27-366
	Helix total = -1.4
	Internal/bulge = 1.9  for closure of 28-365	Size = 2
	Helix total = 0.0
	Internal/bulge = 1.8  for closure of 30-363	Size = 4
		Stack = -0.9  for stack of 33-360
		Stack = -1.1  for stack of 34-359
		Stack = -0.9  for stack of 35-358
		Stack = -2.1  for stack of 36-357
		Stack = -2.4  for stack of 37-356
		Stack = -1.4  for stack of 38-355
		Stack = -0.5  for stack of 39-354
		Stack = 0.3  for stack of 40-353
	Helix total = -9.0
	Internal/bulge = 3.7  for closure of 41-352	Size = 3
		Stack = -2.1  for stack of 42-348
		Stack = -1.1  for stack of 43-347
		Stack = -2.1  for stack of 44-346
		Stack = -3.4  for stack of 45-345
	Helix total = -8.7
	Multiloop = 3.8  for closure of 46-344
		Stack = -2.1  for stack of 290-324
		Stack = -1.3  for stack of 291-323
		Stack = -0.9  for stack of 292-322
		Stack = -2.2  for stack of 293-321
		Stack = -2.1  for stack of 294-320
		Stack = -1.3  for stack of 295-319
		Stack = -1.5  for stack of 296-318
	Helix total = -11.4
	Internal/bulge = 1.9  for closure of 297-317	Size = 5
		Stack = -2.1  for stack of 301-314
	Helix total = -2.1
	Hairpin = 5.4  for closure of 302-313
		Stack = -1.3  for stack of 235-270
		Stack = -0.9  for stack of 236-269
	Helix total = -2.2
	Internal/bulge = 1.2  for closure of 237-268	Size = 2
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 239-266	Size = 2
		Stack = -0.9  for stack of 241-264
		Stack = -0.9  for stack of 242-263
		Stack = -1.3  for stack of 243-262
		Stack = -0.5  for stack of 244-261
		Stack = -1.5  for stack of 245-260
		Stack = -2.1  for stack of 246-259
	Helix total = -7.2
	Hairpin = 6.5  for closure of 247-258
		Stack = -2.4  for stack of 180-219
		Stack = -2.4  for stack of 181-218
		Stack = -1.1  for stack of 182-217
		Stack = -1.3  for stack of 183-216
		Stack = -2.1  for stack of 184-215
	Helix total = -9.3
	Internal/bulge = 3.3  for closure of 185-214	Size = 2
		Stack = -2.4  for stack of 186-211
		Stack = -2.1  for stack of 187-210
		Stack = -1.0  for stack of 188-209
		Stack = -1.3  for stack of 189-208
		Stack = -0.9  for stack of 190-207
		Stack = -0.9  for stack of 191-206
		Stack = -2.2  for stack of 192-205
		Stack = -2.1  for stack of 193-204
	Helix total = -12.9
	Hairpin = 4.4  for closure of 194-203
		Stack = -3.4  for stack of 150-178
		Stack = -2.1  for stack of 151-177
		Stack = -1.0  for stack of 152-176
		Stack = -2.5  for stack of 153-175
	Helix total = -9.0
	Internal/bulge = 1.7  for closure of 154-174	Size = 1 BP stack across bulge = -2.1
		Stack = -1.0  for stack of 156-173
		Stack = -0.9  for stack of 157-172
		Stack = -2.1  for stack of 158-171
		Stack = -2.4  for stack of 159-170
		Stack = -2.2  for stack of 160-169
	Helix total = -8.6
	Hairpin = 4.4  for closure of 161-168
		Stack = -1.4  for stack of 54-80
		Stack = -1.5  for stack of 55-79
		Stack = -2.4  for stack of 56-78
		Stack = -3.3  for stack of 57-77
		Stack = -2.2  for stack of 58-76
		Stack = -0.9  for stack of 59-75
	Helix total = -11.7
	Hairpin = 5.3  for closure of 60-74


	Total energy = -62.4



