Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    19:46 20:45 21:44 22:43 23:42
	Energy of Broken Structure: -149.2
	Energy of Pseudo-Helices:   -12.4
	Pseudoknot Energy Penalty:  7.3
	Total Free Energy:          -154.3
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -0.4
		Stack = -2.4  for stack of 1-303
		Stack = -3.3  for stack of 2-302
	Helix total = -5.7
	Multiloop = 5.8  for closure of 3-301
		Stack = -3.3  for stack of 65-298
		Stack = -3.3  for stack of 66-297
		Stack = -2.4  for stack of 67-296
		Stack = -3.4  for stack of 68-295
		Stack = -2.1  for stack of 69-294
		Stack = -2.2  for stack of 70-293
		Stack = -2.4  for stack of 71-292
	Helix total = -19.1
	Internal/bulge = 2.0  for closure of 72-291	Size = 6
		Stack = -3.4  for stack of 76-287
		Stack = -3.3  for stack of 77-286
		Stack = -2.4  for stack of 78-285
		Stack = -2.2  for stack of 79-284
		Stack = -1.3  for stack of 80-283
		Stack = -2.1  for stack of 81-282
	Helix total = -14.7
	Internal/bulge = 0.6  for closure of 82-281	Size = 2
		Stack = -3.3  for stack of 84-279
		Stack = -2.5  for stack of 85-278
		Stack = -1.5  for stack of 86-277
		Stack = -3.3  for stack of 87-276
		Stack = -2.1  for stack of 88-275
		Stack = -2.1  for stack of 89-274
		Stack = -3.3  for stack of 90-273
		Stack = -3.3  for stack of 91-272
		Stack = -3.4  for stack of 92-271
		Stack = -2.1  for stack of 93-270
	Helix total = -26.9
	Internal/bulge = 4.6  for closure of 94-269	Size = 7
		Stack = -3.3  for stack of 97-263
		Stack = -3.3  for stack of 98-262
		Stack = -2.4  for stack of 99-261
		Stack = -3.3  for stack of 100-260
		Stack = -3.4  for stack of 101-259
		Stack = -3.3  for stack of 102-258
		Stack = -2.4  for stack of 103-257
	Helix total = -21.4
	Internal/bulge = 3.0  for closure of 104-256	Size = 16
	Helix total = 0.0
	Internal/bulge = -1.3  for closure of 113-247	Size = 1 BP stack across bulge = -3.3
		Stack = -3.3  for stack of 115-246
		Stack = -3.3  for stack of 116-245
		Stack = -2.4  for stack of 117-244
	Helix total = -9.0
	Internal/bulge = 3.8  for closure of 118-243	Size = 5
	Helix total = 0.0
	Internal/bulge = 0.5  for closure of 120-238	Size = 2
		Stack = -2.4  for stack of 122-236
		Stack = -3.4  for stack of 123-235
		Stack = -2.4  for stack of 124-234
		Stack = -1.5  for stack of 125-233
	Helix total = -9.7
	Internal/bulge = 1.9  for closure of 126-232	Size = 3
		Stack = -3.4  for stack of 128-229
		Stack = -3.3  for stack of 129-228
		Stack = -2.4  for stack of 130-227
		Stack = -3.3  for stack of 131-226
	Helix total = -12.4
	Internal/bulge = -1.1  for closure of 132-225	Size = 1 BP stack across bulge = -3.4
		Stack = -2.4  for stack of 133-223
	Helix total = -2.4
	Multiloop = 5.3  for closure of 134-222
		Stack = -2.4  for stack of 177-219
		Stack = -3.3  for stack of 178-218
		Stack = -3.3  for stack of 179-217
		Stack = -3.3  for stack of 180-216
	Helix total = -12.3
	Internal/bulge = 3.6  for closure of 181-215	Size = 7
		Stack = -2.1  for stack of 187-212
		Stack = -3.3  for stack of 188-211
	Helix total = -5.4
	Internal/bulge = 1.7  for closure of 189-210	Size = 10
		Stack = -3.3  for stack of 195-204
		Stack = -3.3  for stack of 196-203
	Helix total = -6.6
	Hairpin = 3.3  for closure of 197-202
		Stack = -3.4  for stack of 137-170
		Stack = -2.4  for stack of 138-169
		Stack = -3.3  for stack of 139-168
	Helix total = -9.1
	Internal/bulge = 2.3  for closure of 140-167	Size = 3
		Stack = -3.4  for stack of 142-164
		Stack = -3.3  for stack of 143-163
	Helix total = -6.7
	Internal/bulge = 0.5  for closure of 144-162	Size = 1 BP stack across bulge = -3.3
		Stack = -3.3  for stack of 145-160
		Stack = -3.3  for stack of 146-159
		Stack = -2.1  for stack of 147-158
		Stack = -2.4  for stack of 148-157
		Stack = -3.3  for stack of 149-156
	Helix total = -14.4
	Hairpin = 3.2  for closure of 150-155
		Stack = -3.4  for stack of 9-58
		Stack = -3.3  for stack of 10-57
	Helix total = -6.7
	Multiloop = 5.2  for closure of 11-56
		Stack = -3.3  for stack of 34-55
		Stack = -3.3  for stack of 35-54
		Stack = -2.4  for stack of 36-53
	Helix total = -9.0
	Hairpin = 5.6  for closure of 37-52
		Stack = -3.3  for stack of 12-28
		Stack = -3.3  for stack of 13-27
		Stack = -3.3  for stack of 14-26
		Stack = -1.5  for stack of 15-25
	Helix total = -11.4
	Hairpin = 3.6  for closure of 16-24


	Total energy = -149.2



