Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    146:179 147:178 148:177 149:176 150:175 151:174 197:230 198:229
	    199:228 200:227 201:226 202:225 248:284 249:283 250:282 251:281
	    252:280 253:279 254:278 255:277
	Energy of Broken Structure: 1365.3
	Energy of Pseudo-Helices:   -30.8
	Pseudoknot Energy Penalty:  23.8
	Total Free Energy:          1358.3
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-346
		Stack = -1.5  for stack of 2-345
		Stack = -2.1  for stack of 3-344
		Stack = -2.2  for stack of 4-343
		Stack = -1.3  for stack of 5-342
		Stack = -2.1  for stack of 6-341
	Helix total = -12.5
	Multiloop = 6.6  for closure of 7-340
		Stack = -1.1  for stack of 323-339
		Stack = -2.1  for stack of 324-338
		Stack = -3.3  for stack of 325-337
		Stack = -3.3  for stack of 326-336
	Helix total = -9.8
	Hairpin = 4.4  for closure of 327-335
		Stack = -2.1  for stack of 21-319
		Stack = -0.6  for stack of 22-318
		Stack = -0.5  for stack of 23-317
		Stack = -1.4  for stack of 24-316
		Stack = -0.9  for stack of 25-315
		Stack = -1.3  for stack of 26-314
		Stack = -1.1  for stack of 27-313
		Stack = -1.3  for stack of 28-312
	Helix total = -9.2
	Internal/bulge = 2.6  for closure of 29-311	Size = 9
		Stack = -2.5  for stack of 34-305
		Stack = -2.1  for stack of 35-304
		Stack = -1.1  for stack of 36-303
		Stack = -1.0  for stack of 37-302
		Stack = -0.5  for stack of 38-301
		Stack = -1.3  for stack of 39-300
		Stack = -1.1  for stack of 40-299
	Helix total = -9.6
	Internal/bulge = 4.0  for closure of 41-298	Size = 7
		Stack = -2.4  for stack of 44-292
		Stack = -2.5  for stack of 45-291
		Stack = -0.6  for stack of 46-290
		Stack = -2.4  for stack of 47-289
	Helix total = -7.9
	Multiloop = 1.6  for closure of 48-288
		Stack = -3.4  for stack of 233-268
		Stack = -2.1  for stack of 234-267
		Stack = -2.4  for stack of 235-266
	Helix total = -7.9
	Internal/bulge = 2.2  for closure of 236-265	Size = 3
	Helix total = 0.0
	Internal/bulge = 2.0  for closure of 239-263	Size = 4
	Helix total = 0.0
	Internal/bulge = 2.2  for closure of 242-260	Size = 3
		Stack = -3.3  for stack of 244-257
	Helix total = -3.3
	Hairpin = 5.4  for closure of 245-256
		Stack = -3.4  for stack of 185-211
		Stack = -2.1  for stack of 186-210
	Helix total = -5.5
	Internal/bulge = 2.4  for closure of 187-209	Size = 6
		Stack = -1.1  for stack of 191-205
		Stack = -0.9  for stack of 192-204
	Helix total = -2.0
	Hairpin = 6.2  for closure of 193-203
		Stack = -3.4  for stack of 134-166
		Stack = -3.3  for stack of 135-165
	Helix total = -6.7
	Internal/bulge = 3.6  for closure of 136-164	Size = 8
		Stack = -2.1  for stack of 140-158
		Stack = -2.2  for stack of 141-157
		Stack = -0.9  for stack of 142-156
		Stack = -2.1  for stack of 143-155
	Helix total = -7.3
	Hairpin = 5.1  for closure of 144-154
	Helix total = 0.0
	Internal/bulge = 0.5  for closure of 107-131	Size = 2
		Stack = -0.6  for stack of 109-129
		Stack = -1.3  for stack of 110-128
	Helix total = -1.9
	Internal/bulge = 1.6  for closure of 111-127	Size = 1 BP stack across bulge = -2.2
		Stack = -2.1  for stack of 113-126
		Stack = -2.1  for stack of 114-125
		Stack = -3.4  for stack of 115-124
	Helix total = -7.6
	Hairpin = 4.3  for closure of 116-123
	Helix total = 0.0
	Internal/bulge = 1.7  for closure of 49-58	Size = 2
		Stack = 1.3  for stack of 51-56
	Helix total = 1.3
	Hairpin = 1400.5  for closure of 52-55


	Total energy = 1365.3



