Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    54:73 56:71 57:70 58:69 156:194 157:193 158:192 159:191
	    160:190 161:189 200:226 204:222 208:218 245:281 246:280 248:278
	    256:269 257:268 258:267
	Energy of Broken Structure: -62.0
	Energy of Pseudo-Helices:   -29.6
	Pseudoknot Energy Penalty:  31.5
	Total Free Energy:          -60.1
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-360
		Stack = -1.5  for stack of 2-359
		Stack = -2.1  for stack of 3-358
		Stack = -2.4  for stack of 4-357
		Stack = -2.2  for stack of 5-356
		Stack = -2.4  for stack of 6-355
	Helix total = -13.9
	Multiloop = 5.1  for closure of 7-354
		Stack = -2.4  for stack of 337-353
		Stack = -2.1  for stack of 338-352
		Stack = -3.3  for stack of 339-351
		Stack = -3.3  for stack of 340-350
	Helix total = -11.1
	Hairpin = 4.4  for closure of 341-349
		Stack = -2.1  for stack of 20-333
		Stack = -0.6  for stack of 21-332
		Stack = -2.1  for stack of 22-331
		Stack = -3.3  for stack of 23-330
		Stack = -2.4  for stack of 24-329
		Stack = -1.1  for stack of 25-328
		Stack = -1.3  for stack of 26-327
	Helix total = -12.9
	Internal/bulge = 2.6  for closure of 27-326	Size = 11
		Stack = -2.5  for stack of 34-320
		Stack = -2.1  for stack of 35-319
		Stack = -2.4  for stack of 36-318
		Stack = -2.1  for stack of 37-317
		Stack = -2.1  for stack of 38-316
		Stack = -3.3  for stack of 39-315
		Stack = -2.5  for stack of 40-314
		Stack = -0.6  for stack of 41-313
	Helix total = -17.6
	Internal/bulge = 4.5  for closure of 42-312	Size = 5
		Stack = -2.1  for stack of 44-307
		Stack = -2.2  for stack of 45-306
		Stack = -2.4  for stack of 46-305
		Stack = -2.5  for stack of 47-304
	Helix total = -9.2
	Multiloop = 6.3  for closure of 48-303
		Stack = -2.2  for stack of 260-299
		Stack = -0.9  for stack of 261-298
		Stack = -2.1  for stack of 262-297
		Stack = -3.3  for stack of 263-296
		Stack = -2.2  for stack of 264-295
		Stack = -1.3  for stack of 265-294
	Helix total = -12.0
	Hairpin = 6.3  for closure of 266-293
		Stack = -3.4  for stack of 211-242
		Stack = -3.3  for stack of 212-241
		Stack = -2.1  for stack of 213-240
		Stack = -2.1  for stack of 214-239
		Stack = -1.5  for stack of 215-238
	Helix total = -12.4
	Hairpin = 6.2  for closure of 216-237
		Stack = -1.4  for stack of 141-178
		Stack = -1.5  for stack of 142-177
		Stack = -3.3  for stack of 143-176
		Stack = -2.1  for stack of 144-175
		Stack = -0.9  for stack of 145-174
	Helix total = -9.2
	Internal/bulge = 4.5  for closure of 146-173	Size = 5
		Stack = -2.1  for stack of 148-168
		Stack = -2.1  for stack of 149-167
	Helix total = -4.2
	Internal/bulge = -2.3  for closure of 150-166	Size = 2
		Stack = -2.1  for stack of 152-164
		Stack = -1.4  for stack of 153-163
	Helix total = -3.5
	Hairpin = 6.0  for closure of 154-162
		Stack = -0.9  for stack of 112-138
		Stack = -0.9  for stack of 113-137
	Helix total = -1.8
	Internal/bulge = 1.9  for closure of 114-136	Size = 2
	Helix total = 0.0
	Internal/bulge = 3.0  for closure of 116-134	Size = 3
		Stack = -3.4  for stack of 119-132
	Helix total = -3.4
	Hairpin = 5.5  for closure of 120-131
		Stack = -2.4  for stack of 49-63
		Stack = -2.4  for stack of 50-62
		Stack = -2.1  for stack of 51-61
	Helix total = -6.9
	Hairpin = 3.8  for closure of 52-60


	Total energy = -62.0



