Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    52:71 53:70 54:69 55:68 56:67 187:219 188:218 189:217
	    190:216 191:215 192:214 236:270 237:269 238:268 239:267 240:266
	    241:265 242:264 278:295 279:294 280:293 281:292 282:291 296:312
	    297:311 298:310 299:309
	Energy of Broken Structure: -66.3
	Energy of Pseudo-Helices:   -42.9
	Pseudoknot Energy Penalty:  55.9
	Total Free Energy:          -53.3
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-386
		Stack = -1.5  for stack of 2-385
		Stack = -1.4  for stack of 3-384
		Stack = -2.4  for stack of 4-383
		Stack = -3.3  for stack of 5-382
		Stack = -2.4  for stack of 6-381
	Helix total = -14.3
	Multiloop = 6.5  for closure of 7-380
		Stack = -2.1  for stack of 363-379
		Stack = -3.4  for stack of 364-378
		Stack = -2.1  for stack of 365-377
		Stack = -2.1  for stack of 366-376
	Helix total = -9.7
	Hairpin = 4.4  for closure of 367-375
		Stack = -2.1  for stack of 20-359
		Stack = -0.6  for stack of 21-358
		Stack = -0.5  for stack of 22-357
		Stack = -1.4  for stack of 23-356
		Stack = -0.9  for stack of 24-355
		Stack = -2.1  for stack of 25-354
		Stack = -3.3  for stack of 26-353
	Helix total = -10.9
	Internal/bulge = 1.5  for closure of 27-352	Size = 4
	Helix total = 0.0
	Internal/bulge = 4.0  for closure of 30-349	Size = 5
		Stack = -2.5  for stack of 33-345
		Stack = -2.1  for stack of 34-344
	Helix total = -4.6
	Internal/bulge = -1.4  for closure of 35-343	Size = 2
		Stack = -2.1  for stack of 37-341
		Stack = -1.5  for stack of 38-340
	Helix total = -3.6
	Internal/bulge = 0.3  for closure of 39-339	Size = 4
	Helix total = 0.0
	Internal/bulge = -0.7  for closure of 42-336	Size = 2
		Stack = -1.1  for stack of 44-334
		Stack = -0.9  for stack of 45-333
	Helix total = -2.0
	Internal/bulge = 3.3  for closure of 46-332	Size = 2
		Stack = -2.1  for stack of 47-329
		Stack = -2.1  for stack of 48-328
		Stack = -3.3  for stack of 49-327
		Stack = -2.2  for stack of 50-326
	Helix total = -9.7
	Multiloop = 4.6  for closure of 51-325
		Stack = -3.4  for stack of 302-321
		Stack = -3.3  for stack of 303-320
		Stack = -2.1  for stack of 304-319
		Stack = -0.9  for stack of 305-318
	Helix total = -9.7
	Hairpin = 5.0  for closure of 306-317
		Stack = -1.1  for stack of 272-287
		Stack = -2.4  for stack of 273-286
		Stack = -3.3  for stack of 274-285
		Stack = -2.1  for stack of 275-284
	Helix total = -8.9
	Hairpin = 5.1  for closure of 276-283
		Stack = -2.1  for stack of 224-253
		Stack = -1.3  for stack of 225-252
		Stack = -2.1  for stack of 226-251
		Stack = -2.5  for stack of 227-250
		Stack = -1.0  for stack of 228-249
		Stack = -0.9  for stack of 229-248
		Stack = -2.1  for stack of 230-247
		Stack = -3.4  for stack of 231-246
	Helix total = -15.4
	Hairpin = 4.3  for closure of 232-245
		Stack = -2.2  for stack of 173-205
		Stack = -2.4  for stack of 174-204
		Stack = -2.1  for stack of 175-203
		Stack = -0.9  for stack of 176-202
		Stack = -1.3  for stack of 177-201
		Stack = -1.0  for stack of 178-200
		Stack = -2.1  for stack of 179-199
		Stack = -2.2  for stack of 180-198
		Stack = -1.3  for stack of 181-197
		Stack = -0.5  for stack of 182-196
	Helix total = -16.0
	Hairpin = 5.7  for closure of 183-195
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 122-156	Size = 2
	Helix total = 0.0
	Internal/bulge = 2.8  for closure of 124-154	Size = 4
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 127-151	Size = 2
		Stack = -2.1  for stack of 129-149
		Stack = -3.3  for stack of 130-148
	Helix total = -5.4
	Internal/bulge = 1.4  for closure of 131-147	Size = 4
		Stack = -3.4  for stack of 134-144
		Stack = -2.1  for stack of 135-143
	Helix total = -5.5
	Hairpin = 5.7  for closure of 136-142
		Stack = -2.1  for stack of 58-86
		Stack = -2.4  for stack of 59-85
		Stack = -2.1  for stack of 60-84
		Stack = -2.5  for stack of 61-83
		Stack = -1.5  for stack of 62-82
	Helix total = -10.6
	Hairpin = 6.1  for closure of 63-81


	Total energy = -66.3



