Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    48:65 49:64 50:63 51:62 52:61 157:193 158:192 159:191
	    160:190 161:189 162:188 209:241 210:240 211:239 212:238 213:237
	    260:297 261:296 262:295 263:294 264:292 265:291 266:290
	Energy of Broken Structure: -59.6
	Energy of Pseudo-Helices:   -45.3
	Pseudoknot Energy Penalty:  32.9
	Total Free Energy:          -72.0
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-357
		Stack = -1.5  for stack of 2-356
		Stack = -2.1  for stack of 3-355
		Stack = -3.3  for stack of 4-354
		Stack = -3.4  for stack of 5-353
		Stack = -2.4  for stack of 6-352
	Helix total = -16.0
	Multiloop = 5.1  for closure of 7-351
		Stack = -3.4  for stack of 334-350
		Stack = -2.4  for stack of 335-349
		Stack = -3.3  for stack of 336-348
		Stack = -3.3  for stack of 337-347
	Helix total = -12.4
	Hairpin = 4.4  for closure of 338-346
		Stack = -1.4  for stack of 20-330
		Stack = -2.5  for stack of 21-329
		Stack = -1.4  for stack of 22-328
		Stack = -0.5  for stack of 23-327
		Stack = -2.1  for stack of 24-326
		Stack = -2.2  for stack of 25-325
		Stack = -1.3  for stack of 26-324
	Helix total = -11.4
	Internal/bulge = 2.9  for closure of 27-323	Size = 11
		Stack = -3.3  for stack of 34-317
		Stack = -2.1  for stack of 35-316
	Helix total = -5.4
	Internal/bulge = 1.0  for closure of 36-315	Size = 4
		Stack = -3.3  for stack of 39-312
	Helix total = -3.3
	Internal/bulge = 2.9  for closure of 40-311	Size = 7
		Stack = -2.1  for stack of 43-305
		Stack = -1.1  for stack of 44-304
		Stack = -2.1  for stack of 45-303
		Stack = -3.4  for stack of 46-302
	Helix total = -8.7
	Multiloop = 6.1  for closure of 47-301
		Stack = -2.5  for stack of 244-280
		Stack = -3.3  for stack of 245-279
		Stack = -2.4  for stack of 246-278
		Stack = -2.5  for stack of 247-277
	Helix total = -10.7
	Internal/bulge = 4.1  for closure of 248-276	Size = 7
	Helix total = 0.0
	Internal/bulge = 3.0  for closure of 253-272	Size = 3
		Stack = -1.5  for stack of 255-269
		Stack = -3.3  for stack of 256-268
	Helix total = -4.8
	Hairpin = 5.0  for closure of 257-267
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 195-227	Size = 2
		Stack = -3.4  for stack of 197-225
		Stack = -2.4  for stack of 198-224
		Stack = -3.3  for stack of 199-223
	Helix total = -9.1
	Internal/bulge = 2.3  for closure of 200-222	Size = 8
		Stack = -2.5  for stack of 205-217
		Stack = -0.5  for stack of 206-216
		Stack = -1.5  for stack of 207-215
	Helix total = -4.5
	Hairpin = 4.7  for closure of 208-214
		Stack = -2.4  for stack of 139-179
		Stack = -2.5  for stack of 140-178
		Stack = -1.5  for stack of 141-177
		Stack = -2.1  for stack of 142-176
		Stack = -2.1  for stack of 143-175
		Stack = -2.4  for stack of 144-174
	Helix total = -13.0
	Internal/bulge = 4.6  for closure of 145-173	Size = 11
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 151-166	Size = 2
		Stack = -2.4  for stack of 153-164
	Helix total = -2.4
	Hairpin = 4.4  for closure of 154-163
		Stack = -2.1  for stack of 112-134
	Helix total = -2.1
	Internal/bulge = 1.9  for closure of 113-133	Size = 2
		Stack = -2.5  for stack of 115-131
		Stack = -2.1  for stack of 116-130
		Stack = -2.1  for stack of 117-129
	Helix total = -6.7
	Hairpin = 5.7  for closure of 118-128
		Stack = -2.1  for stack of 53-79
		Stack = -3.4  for stack of 54-78
		Stack = -2.1  for stack of 55-77
		Stack = -2.1  for stack of 56-76
		Stack = -2.5  for stack of 57-75
		Stack = -1.4  for stack of 58-74
	Helix total = -13.6
	Hairpin = 5.7  for closure of 59-73


	Total energy = -59.6



