Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    55:79 56:78 57:77 58:76 60:74 151:195 152:194 153:193
	    154:192 209:244 210:243 211:242 212:241 213:240 214:239 215:238
	    216:237 217:236 260:298 261:297 262:296 263:295 264:293 265:292
	    266:291
	Energy of Broken Structure: 1300.2
	Energy of Pseudo-Helices:   -39.5
	Pseudoknot Energy Penalty:  31.8
	Total Free Energy:          1292.5
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-358
		Stack = -1.5  for stack of 2-357
		Stack = -2.1  for stack of 3-356
		Stack = -3.3  for stack of 4-355
		Stack = -3.4  for stack of 5-354
		Stack = -2.4  for stack of 6-353
	Helix total = -16.0
	Multiloop = 5.1  for closure of 7-352
		Stack = -3.4  for stack of 335-351
		Stack = -2.4  for stack of 336-350
		Stack = -3.3  for stack of 337-349
		Stack = -3.3  for stack of 338-348
	Helix total = -12.4
	Hairpin = 4.4  for closure of 339-347
		Stack = -2.4  for stack of 20-331
		Stack = -2.5  for stack of 21-330
		Stack = 0.3  for stack of 22-329
		Stack = -0.5  for stack of 23-328
		Stack = -2.1  for stack of 24-327
		Stack = -2.5  for stack of 25-326
		Stack = -0.5  for stack of 26-325
	Helix total = -10.2
	Internal/bulge = 3.4  for closure of 27-324	Size = 9
		Stack = -2.2  for stack of 33-319
		Stack = -2.1  for stack of 34-318
		Stack = -2.1  for stack of 35-317
	Helix total = -6.4
	Internal/bulge = 2.3  for closure of 36-316	Size = 3
		Stack = -2.1  for stack of 39-314
		Stack = -2.1  for stack of 40-313
	Helix total = -4.2
	Internal/bulge = 2.9  for closure of 41-312	Size = 7
		Stack = -2.1  for stack of 44-306
		Stack = -1.1  for stack of 45-305
		Stack = -1.3  for stack of 46-304
		Stack = -2.2  for stack of 47-303
	Helix total = -6.7
	Multiloop = 4.1  for closure of 48-302
		Stack = -0.9  for stack of 285-289
	Helix total = -0.9
	Hairpin = 1400.5  for closure of 286-288
		Stack = -2.5  for stack of 245-280
		Stack = -3.3  for stack of 246-279
		Stack = -2.1  for stack of 247-278
		Stack = -2.1  for stack of 248-277
	Helix total = -10.0
	Internal/bulge = 1.7  for closure of 249-276	Size = 12
		Stack = -2.2  for stack of 256-269
		Stack = -2.4  for stack of 257-268
	Helix total = -4.6
	Hairpin = 4.7  for closure of 258-267
		Stack = -2.5  for stack of 199-227
		Stack = -2.4  for stack of 200-226
		Stack = -3.4  for stack of 201-225
		Stack = -3.3  for stack of 202-224
		Stack = -3.3  for stack of 203-223
	Helix total = -14.9
	Internal/bulge = 0.5  for closure of 204-222	Size = 2
		Stack = -2.2  for stack of 206-220
		Stack = -1.3  for stack of 207-219
	Helix total = -3.5
	Hairpin = 5.9  for closure of 208-218
		Stack = -2.1  for stack of 136-183
		Stack = -2.4  for stack of 137-182
		Stack = -3.3  for stack of 138-181
		Stack = -2.4  for stack of 139-180
		Stack = -3.4  for stack of 140-179
	Helix total = -13.6
	Multiloop = 3.1  for closure of 141-178
		Stack = -2.2  for stack of 163-176
		Stack = -2.4  for stack of 164-175
		Stack = -2.1  for stack of 165-174
		Stack = -2.1  for stack of 166-173
	Helix total = -8.8
	Hairpin = 3.1  for closure of 167-172
		Stack = -3.3  for stack of 143-162
		Stack = -2.4  for stack of 144-161
		Stack = -3.3  for stack of 145-160
		Stack = -2.5  for stack of 146-159
		Stack = -1.4  for stack of 147-158
	Helix total = -12.9
	Hairpin = 3.0  for closure of 148-157
		Stack = -2.4  for stack of 112-135
		Stack = -2.1  for stack of 113-134
		Stack = -1.0  for stack of 114-133
		Stack = -2.1  for stack of 115-132
		Stack = -3.4  for stack of 116-131
		Stack = -3.3  for stack of 117-130
		Stack = -2.4  for stack of 118-129
	Helix total = -16.7
	Hairpin = 4.8  for closure of 119-128
		Stack = -2.4  for stack of 49-66
		Stack = -2.4  for stack of 50-65
		Stack = -2.1  for stack of 51-64
		Stack = -3.3  for stack of 52-63
	Helix total = -10.2
	Hairpin = 4.4  for closure of 53-62


	Total energy = 1300.2



