Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    49:66 50:65 51:64 52:63 53:62 149:193 150:192 151:191
	    152:190 207:242 208:241 209:240 210:239 211:238 212:237 213:236
	    214:235 215:234 258:296 259:295 260:294 261:293 262:291 263:290
	    264:289
	Energy of Broken Structure: 1301.4
	Energy of Pseudo-Helices:   -42.1
	Pseudoknot Energy Penalty:  35.6
	Total Free Energy:          1294.9
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-356
		Stack = -1.5  for stack of 2-355
		Stack = -2.1  for stack of 3-354
		Stack = -3.3  for stack of 4-353
		Stack = -3.4  for stack of 5-352
		Stack = -2.4  for stack of 6-351
	Helix total = -16.0
	Multiloop = 5.1  for closure of 7-350
		Stack = -3.4  for stack of 333-349
		Stack = -2.4  for stack of 334-348
		Stack = -3.3  for stack of 335-347
		Stack = -3.3  for stack of 336-346
	Helix total = -12.4
	Hairpin = 4.4  for closure of 337-345
		Stack = -2.4  for stack of 20-329
		Stack = -2.5  for stack of 21-328
		Stack = 0.3  for stack of 22-327
		Stack = -0.5  for stack of 23-326
		Stack = -2.1  for stack of 24-325
		Stack = -2.2  for stack of 25-324
		Stack = -1.3  for stack of 26-323
	Helix total = -10.7
	Internal/bulge = 3.4  for closure of 27-322	Size = 9
		Stack = -2.5  for stack of 33-317
		Stack = -2.1  for stack of 34-316
		Stack = -2.1  for stack of 35-315
	Helix total = -6.7
	Internal/bulge = 2.3  for closure of 36-314	Size = 3
		Stack = -2.1  for stack of 39-312
		Stack = -2.1  for stack of 40-311
	Helix total = -4.2
	Internal/bulge = 2.9  for closure of 41-310	Size = 7
		Stack = -2.1  for stack of 44-304
		Stack = -1.1  for stack of 45-303
		Stack = -1.3  for stack of 46-302
		Stack = -2.2  for stack of 47-301
	Helix total = -6.7
	Multiloop = 4.5  for closure of 48-300
		Stack = -1.1  for stack of 282-288
		Stack = -0.9  for stack of 283-287
	Helix total = -2.0
	Hairpin = 1400.5  for closure of 284-286
		Stack = -2.5  for stack of 243-278
		Stack = -3.3  for stack of 244-277
		Stack = -2.1  for stack of 245-276
		Stack = -2.1  for stack of 246-275
	Helix total = -10.0
	Internal/bulge = 1.7  for closure of 247-274	Size = 12
		Stack = -3.4  for stack of 254-267
		Stack = -3.3  for stack of 255-266
	Helix total = -6.7
	Hairpin = 3.4  for closure of 256-265
		Stack = -3.4  for stack of 197-225
		Stack = -2.4  for stack of 198-224
		Stack = -2.5  for stack of 199-223
		Stack = -0.6  for stack of 200-222
		Stack = -1.3  for stack of 201-221
		Stack = -0.6  for stack of 202-220
		Stack = -2.1  for stack of 203-219
		Stack = -3.4  for stack of 204-218
		Stack = -2.1  for stack of 205-217
	Helix total = -18.4
	Hairpin = 5.9  for closure of 206-216
		Stack = -2.1  for stack of 134-181
		Stack = -2.4  for stack of 135-180
		Stack = -3.3  for stack of 136-179
		Stack = -2.1  for stack of 137-178
		Stack = -2.2  for stack of 138-177
	Helix total = -12.1
	Multiloop = 3.1  for closure of 139-176
		Stack = -2.2  for stack of 161-174
		Stack = -2.4  for stack of 162-173
		Stack = -2.1  for stack of 163-172
		Stack = -2.1  for stack of 164-171
	Helix total = -8.8
	Hairpin = 3.1  for closure of 165-170
		Stack = -3.3  for stack of 141-160
		Stack = -2.4  for stack of 142-159
		Stack = -3.3  for stack of 143-158
		Stack = -2.5  for stack of 144-157
		Stack = -1.4  for stack of 145-156
	Helix total = -12.9
	Hairpin = 3.0  for closure of 146-155
		Stack = -0.9  for stack of 111-133
		Stack = -0.9  for stack of 112-132
		Stack = -1.3  for stack of 113-131
		Stack = -2.1  for stack of 114-130
		Stack = -3.4  for stack of 115-129
		Stack = -3.3  for stack of 116-128
		Stack = -2.4  for stack of 117-127
	Helix total = -14.3
	Hairpin = 5.3  for closure of 118-126
		Stack = -0.9  for stack of 54-79
		Stack = -2.4  for stack of 55-78
		Stack = -2.1  for stack of 56-77
		Stack = -2.1  for stack of 57-76
		Stack = -2.5  for stack of 58-75
	Helix total = -10.0
	Hairpin = 6.4  for closure of 59-74


	Total energy = 1301.4



