Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    45:163 46:162 47:161 48:160 49:159
	Energy of Broken Structure: -12.7
	Energy of Pseudo-Helices:   -5.8
	Pseudoknot Energy Penalty:  7.4
	Total Free Energy:          -11.1
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -4.5
		Stack = -1.3  for stack of 195-236
	Helix total = -1.3
	Internal/bulge = 1.9  for closure of 196-235	Size = 2
		Stack = -1.3  for stack of 198-233
		Stack = -2.2  for stack of 199-232
	Helix total = -3.5
	Multiloop = 5.4  for closure of 200-231
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 216-229	Size = 2
		Stack = -0.9  for stack of 218-227
	Helix total = -0.9
	Hairpin = 4.2  for closure of 219-226
		Stack = -2.1  for stack of 202-215
		Stack = -2.5  for stack of 203-214
		Stack = -1.5  for stack of 204-213
	Helix total = -6.1
	Hairpin = 3.9  for closure of 205-212
	Helix total = 0.0
	Internal/bulge = 0.5  for closure of 149-192	Size = 1 BP stack across bulge = -3.3
		Stack = -2.4  for stack of 151-191
		Stack = -2.2  for stack of 152-190
		Stack = -2.1  for stack of 153-189
		Stack = -2.4  for stack of 154-188
	Helix total = -9.1
	Internal/bulge = 5.4  for closure of 155-187	Size = 15
		Stack = -1.3  for stack of 165-180
		Stack = -1.1  for stack of 166-179
		Stack = -0.9  for stack of 167-178
		Stack = -2.4  for stack of 168-177
		Stack = -2.1  for stack of 169-176
	Helix total = -7.8
	Hairpin = 5.6  for closure of 170-175
		Stack = -2.5  for stack of 94-145
	Helix total = -2.5
	Internal/bulge = 3.3  for closure of 95-144	Size = 5
		Stack = -1.1  for stack of 99-141
		Stack = -2.4  for stack of 100-140
		Stack = -3.3  for stack of 101-139
	Helix total = -6.8
	Internal/bulge = 3.0  for closure of 102-138	Size = 3
		Stack = -0.9  for stack of 105-136
		Stack = -0.9  for stack of 106-135
		Stack = -0.9  for stack of 107-134
	Helix total = -2.7
	Hairpin = 7.2  for closure of 108-133
		Stack = -2.4  for stack of 54-93
		Stack = -2.1  for stack of 55-92
		Stack = -2.1  for stack of 56-91
	Helix total = -6.6
	Internal/bulge = 1.2  for closure of 57-90	Size = 2
	Helix total = 0.0
	Internal/bulge = 2.7  for closure of 59-88	Size = 6
		Stack = -3.3  for stack of 63-84
		Stack = -3.3  for stack of 64-83
	Helix total = -6.6
	Hairpin = 4.9  for closure of 65-82
		Stack = -2.1  for stack of 17-38
		Stack = -0.9  for stack of 18-37
		Stack = -1.0  for stack of 19-36
		Stack = -2.1  for stack of 20-35
		Stack = -2.2  for stack of 21-34
		Stack = -1.3  for stack of 22-33
	Helix total = -9.6
	Internal/bulge = 0.8  for closure of 23-32	Size = 2
	Helix total = 0.0
	Hairpin = 3.1  for closure of 25-30
		Stack = -2.1  for stack of 1-15
		Stack = -1.3  for stack of 2-14
		Stack = -1.0  for stack of 3-13
		Stack = -0.9  for stack of 4-12
	Helix total = -5.3
	Hairpin = 5.6  for closure of 5-11


	Total energy = -12.7



