Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    221:277 223:276 224:275 225:274 226:273 227:272
	Energy of Broken Structure: -51.1
	Energy of Pseudo-Helices:   -8.0
	Pseudoknot Energy Penalty:  8.0
	Total Free Energy:          -51.1
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -2.2
		Stack = -2.2  for stack of 283-296
		Stack = -0.9  for stack of 284-295
		Stack = -0.9  for stack of 285-294
		Stack = -2.4  for stack of 286-293
	Helix total = -6.4
	Hairpin = 3.3  for closure of 287-292
		Stack = -1.1  for stack of 239-263
		Stack = -2.4  for stack of 240-262
		Stack = -3.3  for stack of 241-261
		Stack = -2.1  for stack of 242-260
		Stack = -1.1  for stack of 243-259
	Helix total = -10.0
	Internal/bulge = 2.1  for closure of 244-258	Size = 1 BP stack across bulge = -1.3
		Stack = -0.9  for stack of 245-256
		Stack = -0.9  for stack of 246-255
	Helix total = -1.8
	Hairpin = 4.2  for closure of 247-254
		Stack = -0.9  for stack of 43-237
		Stack = -2.2  for stack of 44-236
		Stack = -2.1  for stack of 45-235
		Stack = -2.1  for stack of 46-234
		Stack = -2.5  for stack of 47-233
		Stack = -1.5  for stack of 48-232
	Helix total = -11.3
	Multiloop = 8.3  for closure of 49-231
		Stack = -2.4  for stack of 177-217
	Helix total = -2.4
	Internal/bulge = 1.9  for closure of 178-216	Size = 10
		Stack = -2.1  for stack of 184-210
		Stack = -2.1  for stack of 185-209
		Stack = -2.2  for stack of 186-208
		Stack = -1.3  for stack of 187-207
		Stack = -2.1  for stack of 188-206
	Helix total = -9.8
	Hairpin = 5.3  for closure of 189-205
		Stack = -2.4  for stack of 54-176
		Stack = -3.3  for stack of 55-175
		Stack = -2.4  for stack of 56-174
	Helix total = -8.1
	Internal/bulge = 0.5  for closure of 57-173	Size = 1 BP stack across bulge = -3.3
		Stack = -1.5  for stack of 58-171
	Helix total = -1.5
	Internal/bulge = 3.1  for closure of 59-170	Size = 7
		Stack = -2.4  for stack of 64-166
		Stack = -3.3  for stack of 65-165
	Helix total = -5.7
	Multiloop = 5.1  for closure of 66-164
	Helix total = 0.0
	Internal/bulge = 0.9  for closure of 148-161	Size = 4
		Stack = -2.2  for stack of 151-158
	Helix total = -2.2
	Hairpin = 4.1  for closure of 152-157
		Stack = -2.1  for stack of 72-146
		Stack = -0.9  for stack of 73-145
		Stack = -1.3  for stack of 74-144
		Stack = -0.9  for stack of 75-143
		Stack = -2.1  for stack of 76-142
		Stack = -3.3  for stack of 77-141
	Helix total = -10.6
	Internal/bulge = 1.6  for closure of 78-140	Size = 1 BP stack across bulge = -2.2
	Helix total = 0.0
	Internal/bulge = 4.6  for closure of 79-138	Size = 4
		Stack = -2.2  for stack of 80-133
		Stack = -3.3  for stack of 81-132
	Helix total = -5.5
	Multiloop = 5.4  for closure of 82-131
		Stack = -2.1  for stack of 110-126
		Stack = -2.1  for stack of 111-125
	Helix total = -4.2
	Internal/bulge = 1.0  for closure of 112-124	Size = 1 BP stack across bulge = -2.4
		Stack = -2.1  for stack of 114-123
		Stack = -2.2  for stack of 115-122
	Helix total = -4.3
	Hairpin = 5.3  for closure of 116-121
		Stack = -2.5  for stack of 85-107
		Stack = -2.1  for stack of 86-106
	Helix total = -4.6
	Internal/bulge = 2.8  for closure of 87-105	Size = 1 BP stack across bulge = -1.0
		Stack = -1.4  for stack of 88-103
		Stack = -1.3  for stack of 89-102
		Stack = -2.1  for stack of 90-101
		Stack = -2.2  for stack of 91-100
		Stack = -0.9  for stack of 92-99
	Helix total = -7.9
	Hairpin = 4.1  for closure of 93-98
		Stack = -1.1  for stack of 1-41
		Stack = -2.4  for stack of 2-40
		Stack = -3.3  for stack of 3-39
		Stack = -2.1  for stack of 4-38
		Stack = -1.5  for stack of 5-37
		Stack = -1.4  for stack of 6-36
	Helix total = -11.8
	Internal/bulge = 1.4  for closure of 7-35	Size = 8
		Stack = -2.4  for stack of 12-30
		Stack = -3.4  for stack of 13-29
		Stack = -2.4  for stack of 14-28
		Stack = -2.2  for stack of 15-27
		Stack = -0.9  for stack of 16-26
	Helix total = -11.3
	Hairpin = 5.5  for closure of 17-25


	Total energy = -51.1



