Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    60:85 61:84 62:83 63:82 210:224 213:221 214:220 232:248
	    233:247 234:246 235:245
	Energy of Broken Structure: -18.2
	Energy of Pseudo-Helices:   -11.6
	Pseudoknot Energy Penalty:  22.4
	Total Free Energy:          -7.4
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-323
		Stack = -1.5  for stack of 2-322
		Stack = -2.1  for stack of 3-321
		Stack = -2.2  for stack of 4-320
		Stack = -0.9  for stack of 5-319
		Stack = -2.1  for stack of 6-318
	Helix total = -12.1
	Multiloop = 5.1  for closure of 7-317
		Stack = -2.2  for stack of 300-316
		Stack = -2.1  for stack of 301-315
		Stack = -2.4  for stack of 302-314
		Stack = -2.1  for stack of 303-313
	Helix total = -8.8
	Hairpin = 4.4  for closure of 304-312
		Stack = -2.4  for stack of 20-296
		Stack = -2.2  for stack of 21-295
		Stack = -2.4  for stack of 22-294
		Stack = -2.1  for stack of 23-293
		Stack = -2.4  for stack of 24-292
		Stack = -2.1  for stack of 25-291
		Stack = -1.3  for stack of 26-290
	Helix total = -14.9
	Internal/bulge = 4.4  for closure of 27-289	Size = 16
		Stack = -1.3  for stack of 36-280
		Stack = -0.9  for stack of 37-279
	Helix total = -2.2
	Internal/bulge = 1.2  for closure of 38-278	Size = 2
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 40-276	Size = 2
	Helix total = 0.0
	Internal/bulge = 2.5  for closure of 42-274	Size = 4
	Helix total = 0.0
	Internal/bulge = 5.1  for closure of 45-271	Size = 11
		Stack = -3.3  for stack of 50-263
		Stack = -2.2  for stack of 51-262
	Helix total = -5.5
	Multiloop = 7.1  for closure of 52-261
		Stack = -3.4  for stack of 238-257
		Stack = -2.1  for stack of 239-256
		Stack = -0.9  for stack of 240-255
		Stack = -1.3  for stack of 241-254
	Helix total = -7.7
	Hairpin = 6.0  for closure of 242-253
		Stack = -2.4  for stack of 215-231
		Stack = -1.1  for stack of 216-230
		Stack = -1.3  for stack of 217-229
	Helix total = -4.8
	Hairpin = 5.2  for closure of 218-228
		Stack = -2.4  for stack of 53-72
		Stack = -2.4  for stack of 54-71
		Stack = -2.1  for stack of 55-70
	Helix total = -6.9
	Hairpin = 4.2  for closure of 56-69


	Total energy = -18.2



