Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    57:78 58:77 59:76 60:75 145:193 146:192 147:191 148:190
	    149:189 150:188 151:187 207:240 208:239 209:238 210:237 211:236
	    212:235 213:234 214:233 257:298 258:297 259:296 260:295 261:293
	    262:292 263:291
	Energy of Broken Structure: -90.6
	Energy of Pseudo-Helices:   -39.6
	Pseudoknot Energy Penalty:  32.3
	Total Free Energy:          -97.9
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-358
		Stack = -1.5  for stack of 2-357
		Stack = -2.1  for stack of 3-356
		Stack = -3.3  for stack of 4-355
		Stack = -3.4  for stack of 5-354
		Stack = -2.4  for stack of 6-353
	Helix total = -16.0
	Multiloop = 5.2  for closure of 7-352
		Stack = -3.3  for stack of 335-351
		Stack = -3.3  for stack of 336-350
		Stack = -3.3  for stack of 337-349
		Stack = -3.3  for stack of 338-348
	Helix total = -13.2
	Hairpin = 4.4  for closure of 339-347
		Stack = -2.4  for stack of 21-331
		Stack = -1.5  for stack of 22-330
		Stack = -0.5  for stack of 23-329
		Stack = -0.5  for stack of 24-328
		Stack = -2.1  for stack of 25-327
		Stack = -2.2  for stack of 26-326
		Stack = -1.3  for stack of 27-325
	Helix total = -10.5
	Internal/bulge = 3.4  for closure of 28-324	Size = 9
		Stack = -2.5  for stack of 34-319
		Stack = -2.1  for stack of 35-318
		Stack = -0.6  for stack of 36-317
		Stack = -1.3  for stack of 37-316
	Helix total = -6.5
	Internal/bulge = 1.7  for closure of 38-315	Size = 1 BP stack across bulge = -2.1
		Stack = -3.4  for stack of 40-314
		Stack = -2.4  for stack of 41-313
	Helix total = -5.8
	Internal/bulge = 2.9  for closure of 42-312	Size = 7
		Stack = -2.1  for stack of 45-306
		Stack = -1.1  for stack of 46-305
		Stack = -1.3  for stack of 47-304
		Stack = -2.2  for stack of 48-303
	Helix total = -6.7
	Multiloop = 1.8  for closure of 49-302
		Stack = -1.1  for stack of 281-289
	Helix total = -1.1
	Hairpin = 5.5  for closure of 282-288
		Stack = -1.4  for stack of 242-277
		Stack = -1.3  for stack of 243-276
		Stack = -1.5  for stack of 244-275
		Stack = -3.3  for stack of 245-274
	Helix total = -7.5
	Internal/bulge = 0.2  for closure of 246-273	Size = 1 BP stack across bulge = -2.1
	Helix total = 0.0
	Internal/bulge = 2.9  for closure of 248-272	Size = 9
		Stack = -3.4  for stack of 253-266
		Stack = -3.3  for stack of 254-265
	Helix total = -6.7
	Hairpin = 4.1  for closure of 255-264
		Stack = -1.4  for stack of 196-224
		Stack = -0.9  for stack of 197-223
		Stack = -0.9  for stack of 198-222
		Stack = -2.4  for stack of 199-221
		Stack = -3.3  for stack of 200-220
	Helix total = -8.9
	Internal/bulge = 0.9  for closure of 201-219	Size = 2
		Stack = -3.4  for stack of 203-217
		Stack = -3.3  for stack of 204-216
	Helix total = -6.7
	Hairpin = 4.9  for closure of 205-215
		Stack = -2.4  for stack of 131-178
		Stack = -2.2  for stack of 132-177
		Stack = -0.9  for stack of 133-176
		Stack = -2.1  for stack of 134-175
		Stack = -3.4  for stack of 135-174
	Helix total = -11.0
	Multiloop = 4.9  for closure of 136-173
		Stack = -2.2  for stack of 158-171
		Stack = -2.1  for stack of 159-170
		Stack = -3.3  for stack of 160-169
		Stack = -3.4  for stack of 161-168
	Helix total = -11.0
	Hairpin = 3.3  for closure of 162-167
		Stack = -2.5  for stack of 138-157
		Stack = -2.1  for stack of 139-156
		Stack = -2.1  for stack of 140-155
		Stack = -2.5  for stack of 141-154
		Stack = -1.5  for stack of 142-153
	Helix total = -10.7
	Hairpin = 3.1  for closure of 143-152
		Stack = -0.6  for stack of 112-129
		Stack = -1.3  for stack of 113-128
		Stack = -2.1  for stack of 114-127
		Stack = -3.4  for stack of 115-126
		Stack = -3.3  for stack of 116-125
	Helix total = -10.7
	Hairpin = 3.1  for closure of 117-124
		Stack = -2.4  for stack of 50-67
		Stack = -3.3  for stack of 51-66
		Stack = -3.3  for stack of 52-65
		Stack = -1.5  for stack of 53-64
	Helix total = -10.5
	Hairpin = 2.3  for closure of 54-63


	Total energy = -90.6



