Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    48:67 49:66 50:65 51:64 52:63 165:200 166:199 167:198
	    168:197 169:196 170:195 216:246 217:245 218:244 219:243 220:242
	    265:301 266:300 267:299 268:298 269:297 270:296 271:295
	Energy of Broken Structure: -88.5
	Energy of Pseudo-Helices:   -48.7
	Pseudoknot Energy Penalty:  31.6
	Total Free Energy:          -105.6
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-362
		Stack = -1.5  for stack of 2-361
		Stack = -2.1  for stack of 3-360
		Stack = -3.3  for stack of 4-359
		Stack = -3.4  for stack of 5-358
		Stack = -2.4  for stack of 6-357
	Helix total = -16.0
	Multiloop = 5.1  for closure of 7-356
		Stack = -3.4  for stack of 339-355
		Stack = -2.4  for stack of 340-354
		Stack = -3.3  for stack of 341-353
		Stack = -3.3  for stack of 342-352
	Helix total = -12.4
	Hairpin = 4.4  for closure of 343-351
		Stack = -2.4  for stack of 20-335
		Stack = -1.5  for stack of 21-334
		Stack = -0.5  for stack of 22-333
		Stack = -0.5  for stack of 23-332
		Stack = -2.1  for stack of 24-331
		Stack = -3.4  for stack of 25-330
	Helix total = -10.4
	Internal/bulge = 1.4  for closure of 26-329	Size = 4
	Helix total = 0.0
	Internal/bulge = 1.5  for closure of 29-326	Size = 5
		Stack = -2.5  for stack of 33-323
		Stack = -0.6  for stack of 34-322
		Stack = -2.4  for stack of 35-321
	Helix total = -5.5
	Internal/bulge = 0.4  for closure of 36-320	Size = 5
		Stack = -2.4  for stack of 39-316
		Stack = -2.2  for stack of 40-315
	Helix total = -4.6
	Internal/bulge = 3.8  for closure of 41-314	Size = 5
		Stack = -2.4  for stack of 43-309
		Stack = -2.2  for stack of 44-308
		Stack = -2.1  for stack of 45-307
		Stack = -3.4  for stack of 46-306
	Helix total = -10.1
	Multiloop = 3.0  for closure of 47-305
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 251-285	Size = 2
		Stack = -1.5  for stack of 253-283
		Stack = -2.1  for stack of 254-282
	Helix total = -3.6
	Internal/bulge = 1.4  for closure of 255-281	Size = 4
	Helix total = 0.0
	Internal/bulge = 2.9  for closure of 258-278	Size = 5
		Stack = -2.4  for stack of 261-274
		Stack = -3.3  for stack of 262-273
	Helix total = -5.7
	Hairpin = 4.5  for closure of 263-272
		Stack = -3.4  for stack of 203-232
		Stack = -2.1  for stack of 204-231
		Stack = 0.3  for stack of 205-230
		Stack = -2.5  for stack of 206-229
		Stack = -3.3  for stack of 207-228
	Helix total = -11.0
	Internal/bulge = -0.7  for closure of 208-227	Size = 4
		Stack = -3.3  for stack of 211-224
		Stack = -3.3  for stack of 212-223
		Stack = -2.2  for stack of 213-222
	Helix total = -8.8
	Hairpin = 3.9  for closure of 214-221
		Stack = -2.2  for stack of 150-181
		Stack = -2.4  for stack of 151-180
		Stack = -3.3  for stack of 152-179
		Stack = -3.3  for stack of 153-178
	Helix total = -11.2
	Internal/bulge = 3.0  for closure of 154-177	Size = 4
		Stack = -2.5  for stack of 158-175
		Stack = -3.3  for stack of 159-174
		Stack = -3.3  for stack of 160-173
		Stack = -2.1  for stack of 161-172
	Helix total = -11.2
	Hairpin = 5.5  for closure of 162-171
		Stack = -2.4  for stack of 115-147
		Stack = -3.4  for stack of 116-146
		Stack = -1.4  for stack of 117-145
		Stack = -2.5  for stack of 118-144
		Stack = -2.1  for stack of 119-143
	Helix total = -11.8
	Internal/bulge = 3.7  for closure of 120-142	Size = 3
		Stack = -3.3  for stack of 121-138
		Stack = -3.4  for stack of 122-137
		Stack = -2.1  for stack of 123-136
		Stack = -2.1  for stack of 124-135
	Helix total = -10.9
	Hairpin = 4.4  for closure of 125-134
		Stack = -2.1  for stack of 54-83
		Stack = -2.5  for stack of 55-82
		Stack = -1.5  for stack of 56-81
	Helix total = -6.1
	Internal/bulge = 0.5  for closure of 57-80	Size = 2
		Stack = -3.3  for stack of 59-78
	Helix total = -3.3
	Hairpin = 5.9  for closure of 60-77


	Total energy = -88.5



