Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    55:77 56:76 59:73 60:72 193:224 194:223 195:222 196:221
	    197:220 198:219 237:265 238:264 239:263 240:262 241:261 242:260
	    282:322 283:321 284:320 285:319 286:318 287:317 288:316 289:315
	Energy of Broken Structure: -38.5
	Energy of Pseudo-Helices:   -36.3
	Pseudoknot Energy Penalty:  47.8
	Total Free Energy:          -27.0
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-383
		Stack = -1.5  for stack of 2-382
		Stack = -2.1  for stack of 3-381
		Stack = -2.4  for stack of 4-380
		Stack = -1.1  for stack of 5-379
		Stack = -2.1  for stack of 6-378
	Helix total = -12.5
	Multiloop = 6.5  for closure of 7-377
		Stack = -2.2  for stack of 360-376
		Stack = -2.4  for stack of 361-375
		Stack = -3.3  for stack of 362-374
		Stack = -3.3  for stack of 363-373
	Helix total = -11.2
	Hairpin = 4.4  for closure of 364-372
		Stack = -2.1  for stack of 20-356
		Stack = -1.1  for stack of 21-355
		Stack = -1.3  for stack of 22-354
		Stack = -0.9  for stack of 23-353
	Helix total = -5.4
	Internal/bulge = 0.8  for closure of 24-352	Size = 2
	Helix total = 0.0
	Internal/bulge = 3.2  for closure of 26-350	Size = 11
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 33-344	Size = 2
		Stack = -0.9  for stack of 35-342
		Stack = -0.9  for stack of 36-341
		Stack = -0.9  for stack of 37-340
		Stack = -2.2  for stack of 38-339
		Stack = -2.1  for stack of 39-338
		Stack = -2.1  for stack of 40-337
		Stack = -2.5  for stack of 41-336
		Stack = -0.6  for stack of 42-335
	Helix total = -12.2
	Internal/bulge = 4.2  for closure of 43-334	Size = 3
		Stack = -2.5  for stack of 44-330
		Stack = -2.1  for stack of 45-329
		Stack = -2.1  for stack of 46-328
		Stack = -2.2  for stack of 47-327
	Helix total = -8.9
	Multiloop = 7.1  for closure of 48-326
		Stack = -2.4  for stack of 268-304
		Stack = -2.4  for stack of 269-303
		Stack = -2.5  for stack of 270-302
		Stack = -0.6  for stack of 271-301
	Helix total = -7.9
	Internal/bulge = 4.0  for closure of 272-300	Size = 5
		Stack = -0.6  for stack of 276-297
	Helix total = -0.6
	Internal/bulge = 3.8  for closure of 277-296	Size = 2
	Helix total = 0.0
	Internal/bulge = 2.0  for closure of 278-293	Size = 4
	Helix total = 0.0
	Hairpin = 4.0  for closure of 281-290
		Stack = -2.1  for stack of 227-252
		Stack = -3.3  for stack of 228-251
		Stack = -1.5  for stack of 229-250
		Stack = -1.4  for stack of 230-249
		Stack = -0.9  for stack of 231-248
		Stack = -1.3  for stack of 232-247
		Stack = -0.9  for stack of 233-246
	Helix total = -11.4
	Hairpin = 6.3  for closure of 234-245
		Stack = -2.2  for stack of 179-211
		Stack = -2.1  for stack of 180-210
		Stack = -2.2  for stack of 181-209
		Stack = -2.4  for stack of 182-208
		Stack = -2.4  for stack of 183-207
		Stack = -0.9  for stack of 184-206
		Stack = -1.4  for stack of 185-205
		Stack = -0.5  for stack of 186-204
		Stack = 0.3  for stack of 187-203
		Stack = -1.3  for stack of 188-202
		Stack = -0.9  for stack of 189-201
		Stack = -1.4  for stack of 190-200
	Helix total = -17.4
	Hairpin = 5.8  for closure of 191-199
		Stack = -3.4  for stack of 153-177
		Stack = -2.1  for stack of 154-176
		Stack = -0.9  for stack of 155-175
		Stack = -0.9  for stack of 156-174
	Helix total = -7.3
	Internal/bulge = 1.2  for closure of 157-173	Size = 2
	Helix total = 0.0
	Hairpin = 5.5  for closure of 159-171
		Stack = -2.1  for stack of 49-70
		Stack = -1.5  for stack of 50-69
		Stack = -2.1  for stack of 51-68
		Stack = -2.5  for stack of 52-67
	Helix total = -8.2
	Hairpin = 6.2  for closure of 53-66


	Total energy = -38.5



