Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    57:73 58:72 59:71 208:238 209:237 210:236 211:235 212:234
	    252:281 253:280 254:279 255:278 256:277 301:341 302:340 303:339
	    304:338 305:337 306:334 307:333
	Energy of Broken Structure: -29.9
	Energy of Pseudo-Helices:   -27.9
	Pseudoknot Energy Penalty:  31.6
	Total Free Energy:          -26.2
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-401
		Stack = -1.5  for stack of 2-400
		Stack = -2.1  for stack of 3-399
		Stack = -2.4  for stack of 4-398
		Stack = -1.1  for stack of 5-397
		Stack = -2.1  for stack of 6-396
	Helix total = -12.5
	Multiloop = 6.5  for closure of 7-395
		Stack = -2.2  for stack of 378-394
		Stack = -2.4  for stack of 379-393
		Stack = -3.3  for stack of 380-392
		Stack = -3.3  for stack of 381-391
	Helix total = -11.2
	Hairpin = 4.4  for closure of 382-390
		Stack = -2.1  for stack of 20-374
		Stack = -1.4  for stack of 21-373
		Stack = 0.3  for stack of 22-372
		Stack = -1.3  for stack of 23-371
		Stack = -0.9  for stack of 24-370
		Stack = -1.1  for stack of 25-369
		Stack = -1.0  for stack of 26-368
		Stack = -2.1  for stack of 27-367
	Helix total = -9.6
	Internal/bulge = 1.9  for closure of 28-366	Size = 4
	Helix total = 0.0
	Internal/bulge = 2.6  for closure of 31-363	Size = 4
	Helix total = 0.0
	Internal/bulge = 0.4  for closure of 34-360	Size = 4
		Stack = -2.1  for stack of 37-357
		Stack = -0.9  for stack of 38-356
		Stack = -0.9  for stack of 39-355
	Helix total = -3.9
	Internal/bulge = 5.2  for closure of 40-354	Size = 5
		Stack = -2.5  for stack of 42-349
		Stack = -2.1  for stack of 43-348
		Stack = -2.1  for stack of 44-347
		Stack = -3.4  for stack of 45-346
	Helix total = -10.1
	Multiloop = 5.4  for closure of 46-345
		Stack = -2.1  for stack of 285-322
		Stack = -0.9  for stack of 286-321
		Stack = -0.9  for stack of 287-320
		Stack = -0.9  for stack of 288-319
		Stack = -1.3  for stack of 289-318
	Helix total = -6.1
	Internal/bulge = 0.6  for closure of 290-317	Size = 4
		Stack = -1.3  for stack of 293-314
	Helix total = -1.3
	Internal/bulge = 1.9  for closure of 294-313	Size = 2
		Stack = -2.1  for stack of 296-311
		Stack = -3.3  for stack of 297-310
		Stack = -2.5  for stack of 298-309
	Helix total = -7.9
	Hairpin = 4.6  for closure of 299-308
		Stack = -2.5  for stack of 241-267
		Stack = -2.1  for stack of 242-266
		Stack = -1.3  for stack of 243-265
		Stack = -0.9  for stack of 244-264
		Stack = -1.1  for stack of 245-263
		Stack = -0.9  for stack of 246-262
	Helix total = -8.8
	Hairpin = 6.7  for closure of 247-261
		Stack = -2.2  for stack of 181-226
		Stack = -2.1  for stack of 182-225
		Stack = -1.1  for stack of 183-224
		Stack = -0.9  for stack of 184-223
		Stack = -1.3  for stack of 185-222
		Stack = 0.3  for stack of 186-221
	Helix total = -7.3
	Internal/bulge = 4.8  for closure of 187-220	Size = 12
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 198-217	Size = 2
		Stack = -1.3  for stack of 200-215
		Stack = -1.4  for stack of 201-214
	Helix total = -2.7
	Hairpin = 6.3  for closure of 202-213
		Stack = -0.9  for stack of 158-180
		Stack = -1.1  for stack of 159-179
		Stack = -0.9  for stack of 160-178
	Helix total = -2.9
	Internal/bulge = 1.7  for closure of 161-177	Size = 2
		Stack = -2.1  for stack of 163-175
		Stack = -3.4  for stack of 164-174
	Helix total = -5.5
	Hairpin = 4.6  for closure of 165-173
		Stack = -2.1  for stack of 48-66
	Helix total = -2.1
	Internal/bulge = -1.4  for closure of 49-65	Size = 2
	Helix total = 0.0
	Hairpin = 6.3  for closure of 51-63


	Total energy = -29.9



