Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    51:68 54:65 214:247 215:246 216:245 217:244 218:243 219:242
	    249:275 250:274 253:271 254:270 305:339 306:338 307:337 308:336
	    309:335 310:334 311:333 312:332
	Energy of Broken Structure: -8.6
	Energy of Pseudo-Helices:   -19.4
	Pseudoknot Energy Penalty:  30.7
	Total Free Energy:          2.7
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-404
		Stack = -1.5  for stack of 2-403
		Stack = -2.1  for stack of 3-402
		Stack = -2.4  for stack of 4-401
		Stack = -1.1  for stack of 5-400
		Stack = -2.1  for stack of 6-399
	Helix total = -12.5
	Multiloop = 6.5  for closure of 7-398
		Stack = -2.2  for stack of 381-397
		Stack = -2.4  for stack of 382-396
		Stack = -3.3  for stack of 383-395
		Stack = -3.3  for stack of 384-394
	Helix total = -11.2
	Hairpin = 4.4  for closure of 385-393
		Stack = -2.1  for stack of 20-377
		Stack = -1.4  for stack of 21-376
		Stack = 0.3  for stack of 22-375
		Stack = -1.3  for stack of 23-374
		Stack = -1.1  for stack of 24-373
		Stack = -1.3  for stack of 25-372
		Stack = -1.4  for stack of 26-371
		Stack = -2.4  for stack of 27-370
	Helix total = -10.7
	Internal/bulge = 2.9  for closure of 28-369	Size = 5
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 31-365	Size = 2
	Helix total = 0.0
	Internal/bulge = 0.3  for closure of 33-363	Size = 4
		Stack = -1.1  for stack of 36-360
		Stack = -0.9  for stack of 37-359
		Stack = -1.3  for stack of 38-358
		Stack = -2.1  for stack of 39-357
		Stack = -2.2  for stack of 40-356
	Helix total = -7.6
	Internal/bulge = 6.1  for closure of 41-355	Size = 9
		Stack = -2.1  for stack of 43-346
		Stack = -2.1  for stack of 44-345
		Stack = -2.2  for stack of 45-344
	Helix total = -6.4
	Multiloop = 5.4  for closure of 46-343
		Stack = -1.4  for stack of 291-324
		Stack = -1.3  for stack of 292-323
		Stack = -0.9  for stack of 293-322
		Stack = -2.2  for stack of 294-321
	Helix total = -5.8
	Internal/bulge = 1.9  for closure of 295-320	Size = 3
		Stack = -0.6  for stack of 298-318
	Helix total = -0.6
	Internal/bulge = 1.9  for closure of 299-317	Size = 2
		Stack = -2.1  for stack of 301-315
	Helix total = -2.1
	Hairpin = 5.0  for closure of 302-314
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 260-289	Size = 2
		Stack = -1.3  for stack of 262-287
		Stack = -0.9  for stack of 263-286
		Stack = -1.1  for stack of 264-285
		Stack = -1.3  for stack of 265-284
	Helix total = -4.6
	Hairpin = 6.7  for closure of 266-283
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 204-233	Size = 2
		Stack = -0.9  for stack of 206-231
		Stack = -1.3  for stack of 207-230
	Helix total = -2.2
	Internal/bulge = 3.0  for closure of 208-229	Size = 3
		Stack = -0.6  for stack of 210-226
		Stack = -0.5  for stack of 211-225
	Helix total = -1.1
	Hairpin = 6.8  for closure of 212-224
		Stack = -2.1  for stack of 183-203
		Stack = -1.3  for stack of 184-202
		Stack = -2.1  for stack of 185-201
		Stack = -3.3  for stack of 186-200
		Stack = -2.2  for stack of 187-199
		Stack = -0.9  for stack of 188-198
		Stack = -0.9  for stack of 189-197
		Stack = -0.9  for stack of 190-196
	Helix total = -13.7
	Hairpin = 5.9  for closure of 191-195
	Helix total = 0.0
	Internal/bulge = 1.6  for closure of 151-182	Size = 2
	Helix total = 0.0
	Internal/bulge = 3.7  for closure of 153-180	Size = 8
		Stack = -0.9  for stack of 158-175
	Helix total = -0.9
	Hairpin = 6.7  for closure of 159-174
		Stack = -0.6  for stack of 47-59
		Stack = -2.1  for stack of 48-58
		Stack = -3.3  for stack of 49-57
	Helix total = -6.0
	Hairpin = 4.7  for closure of 50-56


	Total energy = -8.6



