Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    48:69 49:68 50:67 51:66 52:65 214:249 215:248 216:247
	    217:246 218:245 219:244 220:243 262:293 263:292 264:291 265:290
	    266:289 267:288 268:287 294:331 296:329 301:326 302:325 303:323
	    304:322 305:321
	Energy of Broken Structure: -37.7
	Energy of Pseudo-Helices:   -31.9
	Pseudoknot Energy Penalty:  33.0
	Total Free Energy:          -36.6
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-407
		Stack = -1.5  for stack of 2-406
		Stack = -2.1  for stack of 3-405
		Stack = -2.4  for stack of 4-404
		Stack = -1.1  for stack of 5-403
		Stack = -2.1  for stack of 6-402
	Helix total = -12.5
	Multiloop = 5.1  for closure of 7-401
		Stack = -3.4  for stack of 384-400
		Stack = -2.4  for stack of 385-399
		Stack = -2.4  for stack of 386-398
		Stack = -2.1  for stack of 387-397
	Helix total = -10.3
	Hairpin = 4.4  for closure of 388-396
		Stack = -2.1  for stack of 20-380
		Stack = -0.6  for stack of 21-379
		Stack = -2.1  for stack of 22-378
		Stack = -2.4  for stack of 23-377
		Stack = -1.1  for stack of 24-376
		Stack = -1.3  for stack of 25-375
		Stack = -1.1  for stack of 26-374
	Helix total = -10.7
	Internal/bulge = 1.9  for closure of 27-373	Size = 2
	Helix total = 0.0
	Internal/bulge = 2.3  for closure of 29-371	Size = 1 BP stack across bulge = -0.9
		Stack = -1.3  for stack of 31-370
		Stack = -0.6  for stack of 32-369
		Stack = -1.4  for stack of 33-368
		Stack = -1.3  for stack of 34-367
		Stack = -2.2  for stack of 35-366
		Stack = -2.1  for stack of 36-365
		Stack = -1.1  for stack of 37-364
		Stack = -1.3  for stack of 38-363
		Stack = -1.4  for stack of 39-362
	Helix total = -12.7
	Internal/bulge = 5.3  for closure of 40-361	Size = 7
		Stack = -2.5  for stack of 43-355
		Stack = -2.1  for stack of 44-354
		Stack = -2.1  for stack of 45-353
		Stack = -2.2  for stack of 46-352
	Helix total = -8.9
	Multiloop = 5.6  for closure of 47-351
		Stack = -2.2  for stack of 311-347
		Stack = -0.9  for stack of 312-346
		Stack = -1.3  for stack of 313-345
		Stack = -0.9  for stack of 314-344
		Stack = -1.1  for stack of 315-343
		Stack = -0.9  for stack of 316-342
		Stack = -0.9  for stack of 317-341
		Stack = -0.9  for stack of 318-340
	Helix total = -9.1
	Hairpin = 6.7  for closure of 319-339
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 250-280	Size = 2
		Stack = -1.3  for stack of 252-278
		Stack = -0.9  for stack of 253-277
		Stack = -1.1  for stack of 254-276
		Stack = -1.3  for stack of 255-275
		Stack = -1.1  for stack of 256-274
		Stack = -1.3  for stack of 257-273
		Stack = -1.1  for stack of 258-272
	Helix total = -8.1
	Hairpin = 5.1  for closure of 259-271
		Stack = -2.2  for stack of 185-231
		Stack = -0.9  for stack of 186-230
		Stack = -1.3  for stack of 187-229
		Stack = -1.1  for stack of 188-228
		Stack = -1.3  for stack of 189-227
		Stack = -0.6  for stack of 190-226
	Helix total = -7.4
	Internal/bulge = 6.2  for closure of 191-225	Size = 13
		Stack = -1.1  for stack of 205-224
		Stack = -1.3  for stack of 206-223
		Stack = -0.6  for stack of 207-222
	Helix total = -3.0
	Hairpin = 6.2  for closure of 208-221
		Stack = -0.9  for stack of 152-183
		Stack = -0.9  for stack of 153-182
		Stack = -2.2  for stack of 154-181
		Stack = -2.1  for stack of 155-180
	Helix total = -6.1
	Internal/bulge = 1.8  for closure of 156-179	Size = 8
		Stack = -2.2  for stack of 161-174
		Stack = -0.9  for stack of 162-173
	Helix total = -3.1
	Hairpin = 4.6  for closure of 163-172
		Stack = -1.3  for stack of 55-79
		Stack = -0.6  for stack of 56-78
		Stack = -1.3  for stack of 57-77
		Stack = -2.2  for stack of 58-76
		Stack = -2.1  for stack of 59-75
	Helix total = -7.5
	Hairpin = 6.3  for closure of 60-74


	Total energy = -37.7



