Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    56:84 57:83 58:82 59:81 60:80 337:373 338:372 339:371
	    340:370 341:369 342:368 343:367
	Energy of Broken Structure: 1353.0
	Energy of Pseudo-Helices:   -27.9
	Pseudoknot Energy Penalty:  14.9
	Total Free Energy:          1340.0
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-433
		Stack = -1.5  for stack of 2-432
		Stack = -2.5  for stack of 3-431
		Stack = -3.3  for stack of 4-430
		Stack = -2.1  for stack of 5-429
		Stack = -2.1  for stack of 6-428
	Helix total = -14.8
	Multiloop = 6.5  for closure of 7-427
		Stack = -2.1  for stack of 410-426
		Stack = -3.3  for stack of 411-425
		Stack = -3.3  for stack of 412-424
		Stack = -3.3  for stack of 413-423
	Helix total = -12.0
	Hairpin = 4.4  for closure of 414-422
		Stack = -2.1  for stack of 20-406
		Stack = -2.1  for stack of 21-405
		Stack = -3.3  for stack of 22-404
		Stack = -2.2  for stack of 23-403
	Helix total = -9.7
	Internal/bulge = 2.4  for closure of 24-402	Size = 6
	Helix total = 0.0
	Internal/bulge = 4.6  for closure of 28-398	Size = 16
		Stack = -1.4  for stack of 36-388
	Helix total = -1.4
	Internal/bulge = 1.5  for closure of 37-387	Size = 4
	Helix total = 0.0
	Internal/bulge = 1.1  for closure of 40-384	Size = 4
		Stack = -2.4  for stack of 43-381
		Stack = -3.3  for stack of 44-380
		Stack = -3.3  for stack of 45-379
		Stack = -3.4  for stack of 46-378
	Helix total = -12.4
	Multiloop = 9.1  for closure of 47-377
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 320-358	Size = 2
		Stack = -2.4  for stack of 322-356
		Stack = -3.3  for stack of 323-355
		Stack = -2.2  for stack of 324-354
	Helix total = -7.9
	Internal/bulge = 3.3  for closure of 325-353	Size = 2
		Stack = -2.2  for stack of 326-350
		Stack = -2.1  for stack of 327-349
		Stack = -2.4  for stack of 328-348
	Helix total = -6.7
	Internal/bulge = 4.2  for closure of 329-347	Size = 3
		Stack = -2.4  for stack of 333-346
		Stack = -3.3  for stack of 334-345
	Helix total = -5.7
	Hairpin = 4.5  for closure of 335-344
	Helix total = 0.0
	Internal/bulge = 2.4  for closure of 137-203	Size = 6
	Helix total = 0.0
	Internal/bulge = 3.1  for closure of 141-199	Size = 4
	Helix total = 0.0
	Internal/bulge = 1.6  for closure of 144-196	Size = 2
		Stack = -1.4  for stack of 146-194
		Stack = -3.4  for stack of 147-193
		Stack = -2.1  for stack of 148-192
		Stack = -2.1  for stack of 149-191
		Stack = -2.4  for stack of 150-190
	Helix total = -11.4
	Internal/bulge = 3.3  for closure of 151-189	Size = 5
		Stack = -2.1  for stack of 154-185
		Stack = -3.3  for stack of 155-184
		Stack = -3.4  for stack of 156-183
		Stack = -2.1  for stack of 157-182
		Stack = -2.1  for stack of 158-181
	Helix total = -13.0
	Internal/bulge = 1.2  for closure of 159-180	Size = 6
		Stack = -2.1  for stack of 163-176
	Helix total = -2.1
	Internal/bulge = 1.9  for closure of 164-175	Size = 2
		Stack = -2.4  for stack of 166-173
		Stack = -1.4  for stack of 167-172
	Helix total = -3.8
	Hairpin = 1400.5  for closure of 168-171
		Stack = -2.4  for stack of 48-70
		Stack = -2.1  for stack of 49-69
		Stack = -2.2  for stack of 50-68
		Stack = -1.0  for stack of 51-67
	Helix total = -7.7
	Hairpin = 6.5  for closure of 52-66


	Total energy = 1353.0



