Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    49:66 50:65 51:64 52:63 150:190 151:189 152:188 153:187
	    154:186 155:185 156:184 205:238 206:237 207:236 208:235 209:234
	    210:233 255:293 256:292 257:291 258:290 259:289 260:288 261:287
	Energy of Broken Structure: -111.8
	Energy of Pseudo-Helices:   -49.9
	Pseudoknot Energy Penalty:  33.3
	Total Free Energy:          -128.4
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-354
		Stack = -1.5  for stack of 2-353
		Stack = -2.1  for stack of 3-352
		Stack = -3.3  for stack of 4-351
		Stack = -3.4  for stack of 5-350
		Stack = -2.4  for stack of 6-349
	Helix total = -16.0
	Multiloop = 5.1  for closure of 7-348
		Stack = -3.3  for stack of 331-347
		Stack = -3.3  for stack of 332-346
		Stack = -3.3  for stack of 333-345
		Stack = -3.3  for stack of 334-344
	Helix total = -13.2
	Hairpin = 4.4  for closure of 335-343
		Stack = -2.4  for stack of 20-327
		Stack = -1.5  for stack of 21-326
		Stack = -0.5  for stack of 22-325
		Stack = -2.1  for stack of 23-324
		Stack = -3.3  for stack of 24-323
		Stack = -2.2  for stack of 25-322
		Stack = -1.3  for stack of 26-321
	Helix total = -13.3
	Internal/bulge = 3.3  for closure of 27-320	Size = 5
		Stack = -1.3  for stack of 31-317
	Helix total = -1.3
	Internal/bulge = -0.7  for closure of 32-316	Size = 2
		Stack = -2.5  for stack of 34-314
		Stack = -2.1  for stack of 35-313
		Stack = -2.1  for stack of 36-312
		Stack = -2.2  for stack of 37-311
		Stack = -1.3  for stack of 38-310
		Stack = -2.1  for stack of 39-309
		Stack = -2.5  for stack of 40-308
	Helix total = -14.8
	Internal/bulge = 4.6  for closure of 41-307	Size = 7
		Stack = -3.3  for stack of 44-301
		Stack = -2.1  for stack of 45-300
		Stack = -2.1  for stack of 46-299
		Stack = -3.3  for stack of 47-298
	Helix total = -10.8
	Multiloop = 2.7  for closure of 48-297
		Stack = -3.3  for stack of 242-274
		Stack = -2.4  for stack of 243-273
	Helix total = -5.7
	Internal/bulge = -0.1  for closure of 244-272	Size = 4
		Stack = -3.3  for stack of 247-269
	Helix total = -3.3
	Internal/bulge = 3.9  for closure of 248-268	Size = 6
		Stack = -1.5  for stack of 251-263
	Helix total = -1.5
	Hairpin = 5.4  for closure of 252-262
		Stack = -3.3  for stack of 192-222
	Helix total = -3.3
	Internal/bulge = -0.5  for closure of 193-221	Size = 4
		Stack = -2.1  for stack of 196-218
	Helix total = -2.1
	Internal/bulge = 1.3  for closure of 197-217	Size = 1 BP stack across bulge = -2.1
		Stack = -3.3  for stack of 199-216
		Stack = -3.4  for stack of 200-215
		Stack = -3.3  for stack of 201-214
		Stack = -3.3  for stack of 202-213
		Stack = -3.3  for stack of 203-212
	Helix total = -16.6
	Hairpin = 3.0  for closure of 204-211
		Stack = -2.1  for stack of 135-174
		Stack = -1.4  for stack of 136-173
		Stack = -1.5  for stack of 137-172
		Stack = -3.3  for stack of 138-171
		Stack = -2.4  for stack of 139-170
	Helix total = -10.7
	Internal/bulge = 2.3  for closure of 140-169	Size = 4
		Stack = -2.1  for stack of 142-165
		Stack = -2.1  for stack of 143-164
		Stack = -3.3  for stack of 144-163
		Stack = -2.2  for stack of 145-162
		Stack = -2.4  for stack of 146-161
		Stack = -3.3  for stack of 147-160
		Stack = -2.1  for stack of 148-159
	Helix total = -17.5
	Hairpin = 4.4  for closure of 149-158
		Stack = -3.3  for stack of 112-134
		Stack = -3.4  for stack of 113-133
		Stack = -2.1  for stack of 114-132
		Stack = -1.0  for stack of 115-131
		Stack = -2.5  for stack of 116-130
		Stack = -2.1  for stack of 117-129
		Stack = -0.9  for stack of 118-128
	Helix total = -15.3
	Hairpin = 5.5  for closure of 119-127
		Stack = -3.3  for stack of 56-77
		Stack = -2.1  for stack of 57-76
		Stack = -2.2  for stack of 58-75
		Stack = -3.3  for stack of 59-74
		Stack = -2.4  for stack of 60-73
	Helix total = -13.3
	Hairpin = 4.0  for closure of 61-72


	Total energy = -111.8



