Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    48:66 49:65 50:64 51:63 52:62 154:188 155:187 156:186
	    157:185 158:184 159:183 206:235 207:234 208:233 209:232 256:291
	    257:290 258:289 259:288 260:287 261:286
	Energy of Broken Structure: -68.2
	Energy of Pseudo-Helices:   -37.8
	Pseudoknot Energy Penalty:  31.6
	Total Free Energy:          -74.4
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-352
		Stack = -1.5  for stack of 2-351
		Stack = -2.1  for stack of 3-350
		Stack = -3.3  for stack of 4-349
		Stack = -3.4  for stack of 5-348
		Stack = -2.4  for stack of 6-347
	Helix total = -16.0
	Multiloop = 5.1  for closure of 7-346
		Stack = -3.4  for stack of 329-345
		Stack = -2.4  for stack of 330-344
		Stack = -3.3  for stack of 331-343
		Stack = -3.3  for stack of 332-342
	Helix total = -12.4
	Hairpin = 4.4  for closure of 333-341
		Stack = -2.4  for stack of 20-325
		Stack = -2.5  for stack of 21-324
		Stack = 0.3  for stack of 22-323
		Stack = -0.5  for stack of 23-322
		Stack = -1.3  for stack of 24-321
		Stack = -1.1  for stack of 25-320
		Stack = -2.4  for stack of 26-319
	Helix total = -9.9
	Internal/bulge = 2.9  for closure of 27-318	Size = 12
		Stack = -2.1  for stack of 35-312
		Stack = 0.3  for stack of 36-311
	Helix total = -1.8
	Internal/bulge = 1.2  for closure of 37-310	Size = 3
		Stack = -3.3  for stack of 39-307
		Stack = -2.2  for stack of 40-306
	Helix total = -5.5
	Internal/bulge = 4.5  for closure of 41-305	Size = 5
		Stack = -2.1  for stack of 43-300
		Stack = -1.1  for stack of 44-299
		Stack = -2.1  for stack of 45-298
		Stack = -3.4  for stack of 46-297
	Helix total = -8.7
	Multiloop = 2.1  for closure of 47-296
		Stack = -3.4  for stack of 239-275
		Stack = -3.3  for stack of 240-274
		Stack = -2.4  for stack of 241-273
	Helix total = -9.1
	Internal/bulge = 3.0  for closure of 242-272	Size = 14
		Stack = -1.5  for stack of 250-264
		Stack = -3.3  for stack of 251-263
	Helix total = -4.8
	Hairpin = 5.3  for closure of 252-262
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 191-223	Size = 2
		Stack = -3.4  for stack of 193-221
		Stack = -2.4  for stack of 194-220
		Stack = -3.4  for stack of 195-219
		Stack = -2.1  for stack of 196-218
	Helix total = -11.3
	Internal/bulge = 1.7  for closure of 197-217	Size = 6
		Stack = -2.5  for stack of 201-213
		Stack = -1.5  for stack of 202-212
		Stack = -2.1  for stack of 203-211
	Helix total = -6.1
	Hairpin = 4.6  for closure of 204-210
		Stack = -3.3  for stack of 135-173
		Stack = -2.1  for stack of 136-172
		Stack = -1.5  for stack of 137-171
	Helix total = -6.9
	Internal/bulge = 1.1  for closure of 138-170	Size = 2
	Helix total = 0.0
	Internal/bulge = 5.0  for closure of 140-168	Size = 9
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 148-165	Size = 2
		Stack = -1.5  for stack of 150-163
		Stack = -2.4  for stack of 151-162
		Stack = -3.4  for stack of 152-161
	Helix total = -7.3
	Hairpin = 4.4  for closure of 153-160
		Stack = -2.1  for stack of 114-134
		Stack = -1.4  for stack of 115-133
		Stack = -3.3  for stack of 116-132
		Stack = -3.4  for stack of 117-131
		Stack = -3.3  for stack of 118-130
		Stack = -2.4  for stack of 119-129
	Helix total = -15.9
	Hairpin = 5.3  for closure of 120-128
		Stack = -3.4  for stack of 54-79
		Stack = -2.1  for stack of 55-78
		Stack = -2.1  for stack of 56-77
		Stack = -2.4  for stack of 57-76
		Stack = -1.1  for stack of 58-75
	Helix total = -11.1
	Hairpin = 6.6  for closure of 59-74


	Total energy = -68.2



