Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    57:83 58:82 59:81 60:80 61:79 187:216 188:215 189:214
	    190:213 191:212 192:211 193:210 194:209 247:263 265:281 267:279
	    268:278
	Energy of Broken Structure: -21.0
	Energy of Pseudo-Helices:   -16.6
	Pseudoknot Energy Penalty:  43.4
	Total Free Energy:          5.8
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-355
		Stack = -1.5  for stack of 2-354
		Stack = -2.1  for stack of 3-353
		Stack = -2.5  for stack of 4-352
		Stack = -0.6  for stack of 5-351
		Stack = -2.1  for stack of 6-350
	Helix total = -12.1
	Multiloop = 5.1  for closure of 7-349
		Stack = -3.4  for stack of 332-348
		Stack = -2.4  for stack of 333-347
		Stack = -3.3  for stack of 334-346
		Stack = -3.3  for stack of 335-345
	Helix total = -12.4
	Hairpin = 4.9  for closure of 336-344
		Stack = -2.4  for stack of 20-328
		Stack = -2.5  for stack of 21-327
		Stack = -0.6  for stack of 22-326
		Stack = -0.9  for stack of 23-325
		Stack = -0.9  for stack of 24-324
		Stack = -1.3  for stack of 25-323
		Stack = -2.1  for stack of 26-322
		Stack = -2.2  for stack of 27-321
	Helix total = -12.9
	Internal/bulge = 5.3  for closure of 28-320	Size = 12
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 34-312	Size = 2
		Stack = -1.3  for stack of 36-310
	Helix total = -1.3
	Internal/bulge = 1.9  for closure of 37-309	Size = 2
		Stack = -0.9  for stack of 39-307
	Helix total = -0.9
	Internal/bulge = 2.8  for closure of 40-306	Size = 4
	Helix total = 0.0
	Internal/bulge = 3.9  for closure of 43-303	Size = 6
		Stack = -2.1  for stack of 46-298
		Stack = -0.9  for stack of 47-297
		Stack = -2.1  for stack of 48-296
		Stack = -2.2  for stack of 49-295
	Helix total = -7.3
	Multiloop = 6.6  for closure of 50-294
		Stack = -3.4  for stack of 271-290
		Stack = -2.1  for stack of 272-289
		Stack = -0.9  for stack of 273-288
		Stack = -0.9  for stack of 274-287
	Helix total = -7.3
	Hairpin = 6.2  for closure of 275-286
		Stack = -1.3  for stack of 238-255
		Stack = -0.6  for stack of 239-254
		Stack = -1.3  for stack of 240-253
		Stack = -0.9  for stack of 241-252
	Helix total = -4.1
	Hairpin = 5.0  for closure of 242-251
		Stack = -1.4  for stack of 220-233
		Stack = -0.9  for stack of 221-232
		Stack = -0.9  for stack of 222-231
	Helix total = -3.2
	Hairpin = 5.3  for closure of 223-230
		Stack = -0.9  for stack of 170-208
		Stack = -0.9  for stack of 171-207
		Stack = -1.0  for stack of 172-206
		Stack = -1.3  for stack of 173-205
		Stack = -1.1  for stack of 174-204
		Stack = -0.9  for stack of 175-203
		Stack = -0.9  for stack of 176-202
		Stack = -2.1  for stack of 177-201
		Stack = -2.2  for stack of 178-200
		Stack = -0.9  for stack of 179-199
	Helix total = -12.2
	Internal/bulge = 3.7  for closure of 180-198	Size = 4
		Stack = -1.3  for stack of 184-196
	Helix total = -1.3
	Hairpin = 6.3  for closure of 185-195
		Stack = -2.4  for stack of 51-69
		Stack = -2.4  for stack of 52-68
		Stack = -2.1  for stack of 53-67
		Stack = -2.4  for stack of 54-66
	Helix total = -9.3
	Hairpin = 6.1  for closure of 55-65


	Total energy = -21.0



