Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    20:47 21:46 22:45 23:44 24:43
	Energy of Broken Structure: 1283.0
	Energy of Pseudo-Helices:   -11.5
	Pseudoknot Energy Penalty:  7.3
	Total Free Energy:          1278.8
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = 0.5
		Stack = -2.1  for stack of 1-310
		Stack = -3.3  for stack of 2-309
		Stack = -3.3  for stack of 3-308
	Helix total = -8.7
	Multiloop = 5.5  for closure of 4-307
		Stack = -2.2  for stack of 64-303
		Stack = -0.9  for stack of 65-302
		Stack = -2.4  for stack of 66-301
		Stack = -2.1  for stack of 67-300
		Stack = -2.1  for stack of 68-299
		Stack = -3.3  for stack of 69-298
		Stack = -3.3  for stack of 70-297
	Helix total = -16.3
	Internal/bulge = 2.0  for closure of 71-296	Size = 6
		Stack = -1.5  for stack of 75-292
		Stack = -2.5  for stack of 76-291
	Helix total = -4.0
	Internal/bulge = 0.4  for closure of 77-290	Size = 2
		Stack = -2.4  for stack of 79-288
		Stack = -1.4  for stack of 80-287
		Stack = -1.5  for stack of 81-286
	Helix total = -5.3
	Internal/bulge = -0.2  for closure of 82-285	Size = 4
		Stack = -2.1  for stack of 85-282
		Stack = 0.3  for stack of 86-281
		Stack = -1.4  for stack of 87-280
		Stack = -0.9  for stack of 88-279
		Stack = -0.9  for stack of 89-278
		Stack = -1.3  for stack of 90-277
		Stack = -1.4  for stack of 91-276
		Stack = -1.5  for stack of 92-275
		Stack = -2.4  for stack of 93-274
		Stack = -3.3  for stack of 94-273
	Helix total = -14.9
	Internal/bulge = 3.8  for closure of 95-272	Size = 5
		Stack = -3.3  for stack of 97-267
		Stack = -2.1  for stack of 98-266
		Stack = -1.4  for stack of 99-265
		Stack = -3.4  for stack of 100-264
		Stack = -2.1  for stack of 101-263
		Stack = -2.1  for stack of 102-262
		Stack = -2.4  for stack of 103-261
		Stack = -1.4  for stack of 104-260
		Stack = -0.6  for stack of 105-259
		Stack = -2.1  for stack of 106-258
		Stack = -3.3  for stack of 107-257
	Helix total = -24.2
	Internal/bulge = 4.1  for closure of 108-256	Size = 11
		Stack = -2.5  for stack of 116-251
		Stack = -3.3  for stack of 117-250
		Stack = -2.1  for stack of 118-249
		Stack = -1.5  for stack of 119-248
		Stack = -2.4  for stack of 120-247
	Helix total = -11.8
	Internal/bulge = 4.2  for closure of 121-246	Size = 9
		Stack = -2.4  for stack of 125-239
		Stack = -3.4  for stack of 126-238
		Stack = -2.1  for stack of 127-237
		Stack = -0.6  for stack of 128-236
	Helix total = -8.5
	Internal/bulge = 2.6  for closure of 129-235	Size = 3
		Stack = -1.1  for stack of 131-232
		Stack = -2.4  for stack of 132-231
		Stack = -2.1  for stack of 133-230
		Stack = -2.1  for stack of 134-229
	Helix total = -7.7
	Internal/bulge = 1.6  for closure of 135-228	Size = 1 BP stack across bulge = -2.2
		Stack = -2.1  for stack of 136-226
	Helix total = -2.1
	Multiloop = 2.9  for closure of 137-225
		Stack = -2.1  for stack of 181-222
		Stack = -1.1  for stack of 182-221
		Stack = -2.1  for stack of 183-220
		Stack = -3.3  for stack of 184-219
	Helix total = -8.6
	Internal/bulge = 2.2  for closure of 185-218	Size = 6
		Stack = -3.3  for stack of 190-215
		Stack = -3.3  for stack of 191-214
	Helix total = -6.6
	Internal/bulge = 1.7  for closure of 192-213	Size = 10
		Stack = -3.3  for stack of 198-207
		Stack = -2.1  for stack of 199-206
	Helix total = -5.4
	Hairpin = 4.1  for closure of 200-205
	Helix total = 0.0
	Hairpin = 1400.5  for closure of 176-179
		Stack = -2.4  for stack of 140-175
		Stack = -1.1  for stack of 141-174
		Stack = -2.1  for stack of 142-173
		Stack = -3.3  for stack of 143-172
	Helix total = -8.9
	Internal/bulge = 2.2  for closure of 144-171	Size = 6
		Stack = -3.3  for stack of 147-166
		Stack = -3.3  for stack of 148-165
		Stack = -2.1  for stack of 149-164
		Stack = -2.1  for stack of 150-163
		Stack = -2.4  for stack of 151-162
		Stack = -2.2  for stack of 152-161
		Stack = -2.1  for stack of 153-160
	Helix total = -17.5
	Hairpin = 4.5  for closure of 154-159
		Stack = -2.2  for stack of 9-59
		Stack = -3.3  for stack of 10-58
	Helix total = -5.5
	Multiloop = 5.7  for closure of 11-57
		Stack = -3.4  for stack of 35-56
		Stack = -2.4  for stack of 36-55
		Stack = -3.4  for stack of 37-54
	Helix total = -9.2
	Hairpin = 5.5  for closure of 38-53
		Stack = -2.4  for stack of 13-29
		Stack = -2.1  for stack of 14-28
		Stack = -3.3  for stack of 15-27
		Stack = -1.5  for stack of 16-26
	Helix total = -9.3
	Hairpin = 3.7  for closure of 17-25


	Total energy = 1283.0



