Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    19:46 20:45 21:44 22:43 23:42
	Energy of Broken Structure: 1268.5
	Energy of Pseudo-Helices:   -11.5
	Pseudoknot Energy Penalty:  7.3
	Total Free Energy:          1264.3
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = 0.5
		Stack = -2.1  for stack of 1-308
		Stack = -3.3  for stack of 2-307
	Helix total = -5.4
	Multiloop = 4.7  for closure of 3-306
		Stack = -3.4  for stack of 63-302
		Stack = -3.3  for stack of 64-301
		Stack = -3.3  for stack of 65-300
		Stack = -2.1  for stack of 66-299
		Stack = -2.1  for stack of 67-298
		Stack = -3.3  for stack of 68-297
		Stack = -2.4  for stack of 69-296
	Helix total = -19.9
	Internal/bulge = 2.7  for closure of 70-295	Size = 6
		Stack = -1.5  for stack of 74-291
		Stack = -2.5  for stack of 75-290
		Stack = -2.1  for stack of 76-289
		Stack = -0.9  for stack of 77-288
		Stack = -2.1  for stack of 78-287
		Stack = -2.4  for stack of 79-286
		Stack = -2.2  for stack of 80-285
	Helix total = -13.7
	Internal/bulge = 1.0  for closure of 81-284	Size = 4
		Stack = -3.3  for stack of 84-281
		Stack = -2.1  for stack of 85-280
		Stack = -2.1  for stack of 86-279
		Stack = -2.4  for stack of 87-278
		Stack = -2.2  for stack of 88-277
		Stack = -2.1  for stack of 89-276
		Stack = -1.4  for stack of 90-275
		Stack = -1.5  for stack of 91-274
		Stack = -2.4  for stack of 92-273
		Stack = -3.3  for stack of 93-272
	Helix total = -22.8
	Internal/bulge = 3.8  for closure of 94-271	Size = 5
		Stack = -2.1  for stack of 96-266
		Stack = -2.1  for stack of 97-265
		Stack = -2.4  for stack of 98-264
		Stack = -2.1  for stack of 99-263
		Stack = -3.3  for stack of 100-262
		Stack = -3.3  for stack of 101-261
		Stack = -2.2  for stack of 102-260
		Stack = -0.9  for stack of 103-259
		Stack = -1.3  for stack of 104-258
	Helix total = -19.7
	Internal/bulge = 1.9  for closure of 105-257	Size = 2
	Helix total = 0.0
	Internal/bulge = 4.8  for closure of 107-255	Size = 11
		Stack = -2.5  for stack of 115-250
		Stack = -3.3  for stack of 116-249
		Stack = -2.1  for stack of 117-248
		Stack = -1.5  for stack of 118-247
		Stack = -2.4  for stack of 119-246
	Helix total = -11.8
	Internal/bulge = 3.8  for closure of 120-245	Size = 5
	Helix total = 0.0
	Internal/bulge = 0.5  for closure of 122-240	Size = 2
		Stack = -2.1  for stack of 124-238
		Stack = -2.2  for stack of 125-237
		Stack = -2.1  for stack of 126-236
		Stack = -0.6  for stack of 127-235
	Helix total = -7.0
	Internal/bulge = 2.6  for closure of 128-234	Size = 3
		Stack = -2.5  for stack of 130-231
		Stack = -3.3  for stack of 131-230
		Stack = -2.1  for stack of 132-229
		Stack = -1.1  for stack of 133-228
	Helix total = -9.0
	Internal/bulge = 1.0  for closure of 134-227	Size = 1 BP stack across bulge = -2.4
		Stack = -2.4  for stack of 135-225
	Helix total = -2.4
	Multiloop = 3.7  for closure of 136-224
		Stack = -2.1  for stack of 180-221
		Stack = -3.4  for stack of 181-220
		Stack = -2.4  for stack of 182-219
		Stack = -3.3  for stack of 183-218
	Helix total = -11.2
	Internal/bulge = 2.2  for closure of 184-217	Size = 6
		Stack = -3.3  for stack of 189-214
		Stack = -3.3  for stack of 190-213
	Helix total = -6.6
	Internal/bulge = 1.7  for closure of 191-212	Size = 10
		Stack = -3.3  for stack of 197-206
		Stack = -3.3  for stack of 198-205
	Helix total = -6.6
	Hairpin = 3.3  for closure of 199-204
	Helix total = 0.0
	Hairpin = 1400.5  for closure of 175-178
		Stack = -3.3  for stack of 139-174
		Stack = -3.4  for stack of 140-173
		Stack = -2.4  for stack of 141-172
		Stack = -2.4  for stack of 142-171
	Helix total = -11.5
	Internal/bulge = 2.9  for closure of 143-170	Size = 6
		Stack = -2.2  for stack of 146-165
		Stack = -2.4  for stack of 147-164
		Stack = -3.3  for stack of 148-163
		Stack = -2.1  for stack of 149-162
		Stack = -2.1  for stack of 150-161
		Stack = -3.4  for stack of 151-160
		Stack = -2.1  for stack of 152-159
	Helix total = -17.6
	Hairpin = 4.5  for closure of 153-158
		Stack = -3.4  for stack of 8-58
		Stack = -3.3  for stack of 9-57
	Helix total = -6.7
	Multiloop = 5.7  for closure of 10-56
		Stack = -3.4  for stack of 34-55
		Stack = -2.4  for stack of 35-54
		Stack = -3.4  for stack of 36-53
	Helix total = -9.2
	Hairpin = 5.5  for closure of 37-52
		Stack = -3.3  for stack of 12-28
		Stack = -3.3  for stack of 13-27
		Stack = -3.3  for stack of 14-26
		Stack = -1.5  for stack of 15-25
	Helix total = -11.4
	Hairpin = 3.7  for closure of 16-24


	Total energy = 1268.5



