Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    23:50 24:49 25:48 26:47 27:46
	Energy of Broken Structure: -59.2
	Energy of Pseudo-Helices:   -11.5
	Pseudoknot Energy Penalty:  7.3
	Total Free Energy:          -63.4
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = 0.5
		Stack = -2.1  for stack of 1-315
		Stack = -2.4  for stack of 2-314
		Stack = -1.1  for stack of 3-313
		Stack = -2.1  for stack of 4-312
		Stack = -2.4  for stack of 5-311
		Stack = -2.1  for stack of 6-310
	Helix total = -12.2
	Multiloop = 7.1  for closure of 7-309
		Stack = -2.5  for stack of 67-305
		Stack = -3.3  for stack of 68-304
	Helix total = -5.8
	Internal/bulge = 1.4  for closure of 69-303	Size = 6
		Stack = -3.3  for stack of 73-299
	Helix total = -3.3
	Internal/bulge = 3.0  for closure of 74-298	Size = 8
		Stack = -2.1  for stack of 79-293
	Helix total = -2.1
	Internal/bulge = 1.2  for closure of 80-292	Size = 2
		Stack = -1.4  for stack of 82-290
		Stack = -2.4  for stack of 83-289
	Helix total = -3.8
	Internal/bulge = 2.0  for closure of 84-288	Size = 6
		Stack = -1.5  for stack of 88-284
		Stack = -2.1  for stack of 89-283
		Stack = -2.4  for stack of 90-282
		Stack = -1.1  for stack of 91-281
		Stack = -0.9  for stack of 92-280
	Helix total = -8.0
	Internal/bulge = 1.2  for closure of 93-279	Size = 2
		Stack = -2.1  for stack of 95-277
		Stack = -2.1  for stack of 96-276
	Helix total = -4.2
	Internal/bulge = 3.8  for closure of 97-275	Size = 5
		Stack = -2.1  for stack of 99-270
		Stack = -2.1  for stack of 100-269
	Helix total = -4.2
	Internal/bulge = 1.2  for closure of 101-268	Size = 2
		Stack = -1.3  for stack of 103-266
		Stack = -1.1  for stack of 104-265
		Stack = -2.4  for stack of 105-264
		Stack = -2.1  for stack of 106-263
		Stack = -2.4  for stack of 107-262
	Helix total = -9.3
	Internal/bulge = 4.4  for closure of 108-261	Size = 15
		Stack = -2.2  for stack of 118-254
		Stack = -3.3  for stack of 119-253
		Stack = -3.3  for stack of 120-252
		Stack = -3.3  for stack of 121-251
		Stack = -2.4  for stack of 122-250
	Helix total = -14.5
	Internal/bulge = 3.8  for closure of 123-249	Size = 5
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 125-244	Size = 2
		Stack = -1.4  for stack of 127-242
		Stack = -3.4  for stack of 128-241
	Helix total = -4.8
	Internal/bulge = 1.1  for closure of 129-240	Size = 7
		Stack = -2.4  for stack of 133-235
		Stack = -1.4  for stack of 134-234
		Stack = -1.4  for stack of 135-233
	Helix total = -5.2
	Internal/bulge = 3.0  for closure of 136-232	Size = 3
		Stack = -2.1  for stack of 138-229
	Helix total = -2.1
	Multiloop = 6.8  for closure of 139-228
		Stack = 0.3  for stack of 183-225
		Stack = -2.5  for stack of 184-224
		Stack = -1.4  for stack of 185-223
		Stack = -2.1  for stack of 186-222
	Helix total = -5.7
	Internal/bulge = 4.6  for closure of 187-221	Size = 7
		Stack = -2.1  for stack of 193-218
		Stack = -2.2  for stack of 194-217
	Helix total = -4.3
	Internal/bulge = 2.4  for closure of 195-216	Size = 10
		Stack = -3.3  for stack of 201-210
		Stack = -3.3  for stack of 202-209
	Helix total = -6.6
	Hairpin = 3.3  for closure of 203-208
		Stack = -3.3  for stack of 142-177
		Stack = -2.2  for stack of 143-176
		Stack = -1.3  for stack of 144-175
		Stack = -1.1  for stack of 145-174
	Helix total = -7.9
	Internal/bulge = 2.7  for closure of 146-173	Size = 6
		Stack = -2.4  for stack of 150-169
		Stack = -2.2  for stack of 151-168
		Stack = -2.1  for stack of 152-167
		Stack = -0.6  for stack of 153-166
		Stack = -2.1  for stack of 154-165
	Helix total = -9.4
	Internal/bulge = 1.2  for closure of 155-164	Size = 2
	Helix total = 0.0
	Hairpin = 4.1  for closure of 157-162
		Stack = -2.4  for stack of 12-62
		Stack = -3.3  for stack of 13-61
	Helix total = -5.7
	Multiloop = 4.8  for closure of 14-60
		Stack = -3.3  for stack of 38-59
		Stack = -3.3  for stack of 39-58
		Stack = -2.4  for stack of 40-57
	Helix total = -9.0
	Hairpin = 5.6  for closure of 41-56
		Stack = -3.3  for stack of 16-32
		Stack = -2.2  for stack of 17-31
		Stack = -1.3  for stack of 18-30
		Stack = -0.6  for stack of 19-29
	Helix total = -7.4
	Hairpin = 5.9  for closure of 20-28


	Total energy = -59.2



