Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    16:366 17:365 18:364 19:363 20:362 21:361 22:360 92:302
	    93:301 94:300 95:299
	Energy of Broken Structure: -149.6
	Energy of Pseudo-Helices:   -24.3
	Pseudoknot Energy Penalty:  17.6
	Total Free Energy:          -156.3
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = 0.0
		Stack = -2.4  for stack of 1-433
		Stack = -3.3  for stack of 2-432
		Stack = -2.4  for stack of 3-431
		Stack = -1.4  for stack of 4-430
		Stack = -1.4  for stack of 5-429
		Stack = -2.4  for stack of 6-428
		Stack = -2.1  for stack of 7-427
		Stack = -2.2  for stack of 8-426
		Stack = -0.9  for stack of 9-425
		Stack = -2.1  for stack of 10-424
		Stack = -3.3  for stack of 11-423
		Stack = -3.4  for stack of 12-422
	Helix total = -27.3
	Internal/bulge = 1.1  for closure of 13-421	Size = 3
	Helix total = 0.0
	Multiloop = 5.2  for closure of 15-418
		Stack = -0.9  for stack of 76-416
		Stack = -2.1  for stack of 77-415
	Helix total = -3.0
	Internal/bulge = 0.4  for closure of 78-414	Size = 1 BP stack across bulge = -3.4
		Stack = -3.3  for stack of 80-413
		Stack = -2.4  for stack of 81-412
		Stack = -3.3  for stack of 82-411
		Stack = -2.4  for stack of 83-410
	Helix total = -11.4
	Multiloop = 4.8  for closure of 84-409
		Stack = -3.3  for stack of 368-401
		Stack = -2.4  for stack of 369-400
		Stack = -2.5  for stack of 370-399
		Stack = -1.4  for stack of 371-398
		Stack = -3.4  for stack of 372-397
		Stack = -3.3  for stack of 373-396
		Stack = -2.4  for stack of 374-395
		Stack = -3.4  for stack of 375-394
		Stack = -3.3  for stack of 376-393
		Stack = -1.4  for stack of 377-392
		Stack = 1.3  for stack of 378-391
	Helix total = -25.5
	Internal/bulge = 2.4  for closure of 379-390	Size = 1 BP stack across bulge = -1.0
		Stack = -2.1  for stack of 381-389
		Stack = -3.4  for stack of 382-388
	Helix total = -5.5
	Hairpin = 5.4  for closure of 383-387
	Helix total = 0.0
	Internal/bulge = 2.2  for closure of 330-349	Size = 10
		Stack = -2.4  for stack of 336-343
	Helix total = -2.4
	Hairpin = 3.1  for closure of 337-342
		Stack = -3.3  for stack of 250-323
		Stack = -3.4  for stack of 251-322
		Stack = -3.3  for stack of 252-321
	Helix total = -10.0
	Multiloop = 4.6  for closure of 253-320
		Stack = -3.4  for stack of 282-314
		Stack = -2.1  for stack of 283-313
		Stack = -2.1  for stack of 284-312
		Stack = -3.3  for stack of 285-311
		Stack = -3.4  for stack of 286-310
	Helix total = -14.3
	Internal/bulge = 2.7  for closure of 287-309	Size = 8
		Stack = -3.3  for stack of 294-306
		Stack = -3.3  for stack of 295-305
		Stack = -2.5  for stack of 296-304
	Helix total = -9.1
	Hairpin = 5.6  for closure of 297-303
		Stack = -3.3  for stack of 259-279
		Stack = -3.4  for stack of 260-278
		Stack = -3.3  for stack of 261-277
		Stack = -2.4  for stack of 262-276
		Stack = -3.4  for stack of 263-275
		Stack = -2.1  for stack of 264-274
		Stack = -2.2  for stack of 265-273
	Helix total = -20.1
	Hairpin = 4.7  for closure of 266-272
		Stack = -2.1  for stack of 85-246
		Stack = -0.9  for stack of 86-245
		Stack = -2.4  for stack of 87-244
	Helix total = -5.4
	Internal/bulge = 4.7  for closure of 88-243	Size = 8
		Stack = -3.3  for stack of 97-242
		Stack = -3.3  for stack of 98-241
		Stack = -2.2  for stack of 99-240
		Stack = -2.1  for stack of 100-239
	Helix total = -10.9
	Multiloop = 1.7  for closure of 101-238
		Stack = -3.3  for stack of 132-237
	Helix total = -3.3
	Internal/bulge = 3.2  for closure of 133-236	Size = 3
		Stack = -2.2  for stack of 137-235
	Helix total = -2.2
	Multiloop = 5.0  for closure of 138-234
		Stack = -2.1  for stack of 205-224
		Stack = -1.4  for stack of 206-223
		Stack = -0.5  for stack of 207-222
		Stack = -1.5  for stack of 208-221
		Stack = -3.3  for stack of 209-220
		Stack = -2.4  for stack of 210-219
		Stack = -3.3  for stack of 211-218
	Helix total = -14.5
	Hairpin = 3.1  for closure of 212-217
		Stack = -3.3  for stack of 184-202
		Stack = -2.2  for stack of 185-201
		Stack = -2.1  for stack of 186-200
		Stack = -3.4  for stack of 187-199
		Stack = -2.4  for stack of 188-198
	Helix total = -13.4
	Hairpin = 3.8  for closure of 189-197
		Stack = -3.3  for stack of 154-176
	Helix total = -3.3
	Internal/bulge = 2.8  for closure of 155-175	Size = 2
		Stack = -3.4  for stack of 156-172
		Stack = -3.3  for stack of 157-171
		Stack = -2.1  for stack of 158-170
		Stack = -1.4  for stack of 159-169
		Stack = -1.5  for stack of 160-168
	Helix total = -11.7
	Hairpin = 4.9  for closure of 161-167
	Helix total = 0.0
	Internal/bulge = 0.5  for closure of 117-131	Size = 1 BP stack across bulge = -3.3
		Stack = -2.4  for stack of 118-129
		Stack = -2.4  for stack of 119-128
		Stack = -2.1  for stack of 120-127
	Helix total = -6.9
	Hairpin = 3.1  for closure of 121-126
		Stack = -1.1  for stack of 102-116
		Stack = -0.9  for stack of 103-115
		Stack = -2.1  for stack of 104-114
		Stack = -3.4  for stack of 105-113
	Helix total = -7.5
	Hairpin = 4.7  for closure of 106-112
		Stack = -2.4  for stack of 24-71
		Stack = -1.5  for stack of 25-70
		Stack = -2.5  for stack of 26-69
		Stack = -2.1  for stack of 27-68
		Stack = -2.4  for stack of 28-67
		Stack = -2.4  for stack of 29-66
	Helix total = -13.3
	Internal/bulge = 0.4  for closure of 30-65	Size = 1 BP stack across bulge = -3.4
		Stack = -2.4  for stack of 31-63
		Stack = -2.5  for stack of 32-62
	Helix total = -4.9
	Internal/bulge = 2.2  for closure of 33-61	Size = 2
		Stack = -1.5  for stack of 35-59
		Stack = -0.5  for stack of 36-58
		Stack = -2.5  for stack of 37-57
		Stack = -2.1  for stack of 38-56
		Stack = -0.6  for stack of 39-55
	Helix total = -7.2
	Internal/bulge = 1.7  for closure of 40-54	Size = 1 BP stack across bulge = -2.1
		Stack = -2.2  for stack of 41-52
		Stack = -2.1  for stack of 42-51
	Helix total = -4.3
	Hairpin = 3.8  for closure of 43-50


	Total energy = -149.6



