Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    55:71 56:70 57:69 58:68 153:184 154:183 155:182 156:181
	    157:180 202:232 203:231 204:230 205:229 206:228 207:227 253:293
	    255:291 256:290 257:289 258:288 259:287
	Energy of Broken Structure: -55.5
	Energy of Pseudo-Helices:   -33.6
	Pseudoknot Energy Penalty:  46.4
	Total Free Energy:          -42.7
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-354
		Stack = -1.5  for stack of 2-353
		Stack = -1.4  for stack of 3-352
		Stack = -2.4  for stack of 4-351
		Stack = -2.1  for stack of 5-350
		Stack = -2.1  for stack of 6-349
	Helix total = -12.8
	Multiloop = 6.6  for closure of 7-348
		Stack = -2.1  for stack of 331-347
		Stack = -3.3  for stack of 332-346
		Stack = -3.3  for stack of 333-345
		Stack = -3.3  for stack of 334-344
	Helix total = -12.0
	Hairpin = 4.4  for closure of 335-343
		Stack = -2.1  for stack of 22-327
		Stack = -0.6  for stack of 23-326
		Stack = -0.5  for stack of 24-325
		Stack = -1.4  for stack of 25-324
		Stack = -2.4  for stack of 26-323
		Stack = -2.4  for stack of 27-322
		Stack = -2.5  for stack of 28-321
		Stack = -0.5  for stack of 29-320
	Helix total = -12.4
	Internal/bulge = 2.8  for closure of 30-319	Size = 4
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 33-316	Size = 2
		Stack = -2.5  for stack of 35-314
		Stack = -2.1  for stack of 36-313
		Stack = -1.4  for stack of 37-312
		Stack = -0.5  for stack of 38-311
		Stack = 0.3  for stack of 39-310
		Stack = -1.3  for stack of 40-309
		Stack = -1.1  for stack of 41-308
	Helix total = -8.6
	Internal/bulge = 4.0  for closure of 42-307	Size = 7
		Stack = -2.4  for stack of 45-301
		Stack = -2.2  for stack of 46-300
		Stack = -0.9  for stack of 47-299
		Stack = -0.9  for stack of 48-298
	Helix total = -6.4
	Multiloop = 6.8  for closure of 49-297
		Stack = -1.4  for stack of 235-274
		Stack = -0.9  for stack of 236-273
		Stack = -1.3  for stack of 237-272
		Stack = -1.1  for stack of 238-271
	Helix total = -4.7
	Internal/bulge = 3.0  for closure of 239-270	Size = 3
	Helix total = 0.0
	Internal/bulge = 2.2  for closure of 242-268	Size = 10
		Stack = -3.4  for stack of 248-262
		Stack = -3.3  for stack of 249-261
	Helix total = -6.7
	Hairpin = 4.3  for closure of 250-260
		Stack = -2.2  for stack of 190-216
		Stack = -2.1  for stack of 191-215
		Stack = -2.1  for stack of 192-214
		Stack = -3.4  for stack of 193-213
		Stack = -2.1  for stack of 194-212
		Stack = -0.9  for stack of 195-211
	Helix total = -12.8
	Internal/bulge = 1.9  for closure of 196-210	Size = 2
	Helix total = 0.0
	Hairpin = 6.2  for closure of 198-208
		Stack = -3.4  for stack of 138-171
		Stack = -2.1  for stack of 139-170
		Stack = -0.6  for stack of 140-169
		Stack = -1.3  for stack of 141-168
		Stack = -0.9  for stack of 142-167
		Stack = -1.4  for stack of 143-166
		Stack = -1.5  for stack of 144-165
		Stack = -2.1  for stack of 145-164
		Stack = -1.3  for stack of 146-163
		Stack = 0.3  for stack of 147-162
		Stack = -2.1  for stack of 148-161
	Helix total = -16.4
	Internal/bulge = 1.5  for closure of 149-160	Size = 2
	Helix total = 0.0
	Hairpin = 5.1  for closure of 151-158
		Stack = -1.0  for stack of 109-133
		Stack = -1.1  for stack of 110-132
		Stack = -2.4  for stack of 111-131
		Stack = -1.4  for stack of 112-130
		Stack = -2.5  for stack of 113-129
		Stack = -2.1  for stack of 114-128
		Stack = -2.1  for stack of 115-127
	Helix total = -12.6
	Hairpin = 5.7  for closure of 116-126
		Stack = -2.4  for stack of 50-62
		Stack = -3.4  for stack of 51-61
		Stack = -3.3  for stack of 52-60
	Helix total = -9.1
	Hairpin = 4.3  for closure of 53-59


	Total energy = -55.5



