Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    30:46 31:45 32:44 33:43 128:159 129:158 130:157 131:156
	    132:155 177:207 178:206 179:205 180:204 181:203 182:202 228:268
	    230:266 231:265 232:264 233:263 234:262
	Energy of Broken Structure: -35.5
	Energy of Pseudo-Helices:   -33.6
	Pseudoknot Energy Penalty:  46.4
	Total Free Energy:          -22.7
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -0.1
		Stack = -2.4  for stack of 1-298
		Stack = -2.4  for stack of 2-297
		Stack = -2.5  for stack of 3-296
		Stack = -0.5  for stack of 4-295
	Helix total = -7.8
	Internal/bulge = 2.8  for closure of 5-294	Size = 4
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 8-291	Size = 2
		Stack = -2.5  for stack of 10-289
		Stack = -2.1  for stack of 11-288
		Stack = -1.4  for stack of 12-287
		Stack = -0.5  for stack of 13-286
		Stack = 0.3  for stack of 14-285
		Stack = -1.3  for stack of 15-284
		Stack = -1.1  for stack of 16-283
	Helix total = -8.6
	Internal/bulge = 4.0  for closure of 17-282	Size = 7
		Stack = -2.4  for stack of 20-276
		Stack = -2.2  for stack of 21-275
		Stack = -0.9  for stack of 22-274
		Stack = -0.9  for stack of 23-273
	Helix total = -6.4
	Multiloop = 6.8  for closure of 24-272
		Stack = -1.4  for stack of 210-249
		Stack = -0.9  for stack of 211-248
		Stack = -1.3  for stack of 212-247
		Stack = -1.1  for stack of 213-246
	Helix total = -4.7
	Internal/bulge = 3.0  for closure of 214-245	Size = 3
	Helix total = 0.0
	Internal/bulge = 2.2  for closure of 217-243	Size = 10
		Stack = -3.4  for stack of 223-237
		Stack = -3.3  for stack of 224-236
	Helix total = -6.7
	Hairpin = 4.3  for closure of 225-235
		Stack = -2.2  for stack of 165-191
		Stack = -2.1  for stack of 166-190
		Stack = -2.1  for stack of 167-189
		Stack = -3.4  for stack of 168-188
		Stack = -2.1  for stack of 169-187
		Stack = -0.9  for stack of 170-186
	Helix total = -12.8
	Internal/bulge = 1.9  for closure of 171-185	Size = 2
	Helix total = 0.0
	Hairpin = 6.2  for closure of 173-183
		Stack = -3.4  for stack of 113-146
		Stack = -2.1  for stack of 114-145
		Stack = -0.6  for stack of 115-144
		Stack = -1.3  for stack of 116-143
		Stack = -0.9  for stack of 117-142
		Stack = -1.4  for stack of 118-141
		Stack = -1.5  for stack of 119-140
		Stack = -2.1  for stack of 120-139
		Stack = -1.3  for stack of 121-138
		Stack = 0.3  for stack of 122-137
		Stack = -2.1  for stack of 123-136
	Helix total = -16.4
	Internal/bulge = 1.5  for closure of 124-135	Size = 2
	Helix total = 0.0
	Hairpin = 5.1  for closure of 126-133
		Stack = -1.0  for stack of 84-108
		Stack = -1.1  for stack of 85-107
		Stack = -2.4  for stack of 86-106
		Stack = -1.4  for stack of 87-105
		Stack = -2.5  for stack of 88-104
		Stack = -2.1  for stack of 89-103
		Stack = -2.1  for stack of 90-102
	Helix total = -12.6
	Hairpin = 5.7  for closure of 91-101
		Stack = -2.4  for stack of 25-37
		Stack = -3.4  for stack of 26-36
		Stack = -3.3  for stack of 27-35
	Helix total = -9.1
	Hairpin = 4.3  for closure of 28-34


	Total energy = -35.5



