Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    57:78 59:76 60:75 61:74 145:182 146:181 147:180 148:179
	    149:178 150:177 151:176 197:230 198:229 199:228 200:227 201:226
	    202:225 203:224 204:223 247:286 248:285 249:284 250:283 251:282
	    253:280
	Energy of Broken Structure: -61.0
	Energy of Pseudo-Helices:   -38.6
	Pseudoknot Energy Penalty:  35.6
	Total Free Energy:          -64.0
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-346
		Stack = -1.5  for stack of 2-345
		Stack = -2.1  for stack of 3-344
		Stack = -2.4  for stack of 4-343
		Stack = -2.2  for stack of 5-342
		Stack = -2.4  for stack of 6-341
	Helix total = -13.9
	Multiloop = 5.2  for closure of 7-340
		Stack = -3.4  for stack of 323-339
		Stack = -2.4  for stack of 324-338
		Stack = -3.3  for stack of 325-337
		Stack = -3.3  for stack of 326-336
	Helix total = -12.4
	Hairpin = 5.0  for closure of 327-335
		Stack = -2.1  for stack of 21-319
		Stack = -1.0  for stack of 22-318
		Stack = -1.4  for stack of 23-317
		Stack = -0.9  for stack of 24-316
		Stack = -2.1  for stack of 25-315
		Stack = -2.5  for stack of 26-314
	Helix total = -10.0
	Internal/bulge = 3.0  for closure of 27-313	Size = 3
		Stack = -3.3  for stack of 30-311
	Helix total = -3.3
	Internal/bulge = 1.0  for closure of 31-310	Size = 4
		Stack = -2.1  for stack of 34-307
		Stack = -1.5  for stack of 35-306
		Stack = -1.4  for stack of 36-305
		Stack = -1.3  for stack of 37-304
		Stack = -1.0  for stack of 38-303
	Helix total = -7.3
	Internal/bulge = 1.6  for closure of 39-302	Size = 4
	Helix total = 0.0
	Internal/bulge = 2.9  for closure of 42-299	Size = 6
		Stack = -2.4  for stack of 45-294
		Stack = -2.2  for stack of 46-293
		Stack = -2.1  for stack of 47-292
		Stack = -2.2  for stack of 48-291
	Helix total = -8.9
	Multiloop = 7.7  for closure of 49-290
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 231-270	Size = 2
		Stack = -3.3  for stack of 233-268
		Stack = -2.4  for stack of 234-267
		Stack = -0.9  for stack of 235-266
		Stack = -0.9  for stack of 236-265
		Stack = -2.1  for stack of 237-264
		Stack = -2.4  for stack of 238-263
		Stack = -2.1  for stack of 239-262
	Helix total = -14.1
	Internal/bulge = 1.3  for closure of 240-261	Size = 4
		Stack = -2.4  for stack of 243-258
	Helix total = -2.4
	Hairpin = 5.9  for closure of 244-257
		Stack = -1.4  for stack of 185-214
		Stack = -0.6  for stack of 186-213
		Stack = -2.4  for stack of 187-212
		Stack = -2.1  for stack of 188-211
		Stack = -0.9  for stack of 189-210
		Stack = -0.9  for stack of 190-209
		Stack = -0.9  for stack of 191-208
		Stack = -1.0  for stack of 192-207
		Stack = -2.1  for stack of 193-206
	Helix total = -12.3
	Hairpin = 5.5  for closure of 194-205
		Stack = -1.4  for stack of 129-167
		Stack = -2.1  for stack of 130-166
		Stack = -2.4  for stack of 131-165
		Stack = -0.9  for stack of 132-164
	Helix total = -6.8
	Internal/bulge = 3.7  for closure of 133-163	Size = 3
		Stack = -0.9  for stack of 135-160
		Stack = -0.9  for stack of 136-159
		Stack = -1.3  for stack of 137-158
		Stack = -2.1  for stack of 138-157
	Helix total = -5.2
	Internal/bulge = 0.0  for closure of 139-156	Size = 4
		Stack = -0.9  for stack of 142-153
	Helix total = -0.9
	Hairpin = 5.3  for closure of 143-152
		Stack = -1.3  for stack of 109-128
		Stack = -2.1  for stack of 110-127
		Stack = -3.4  for stack of 111-126
		Stack = -2.1  for stack of 112-125
		Stack = -2.1  for stack of 113-124
	Helix total = -11.0
	Hairpin = 5.0  for closure of 114-123
		Stack = -2.1  for stack of 50-68
		Stack = -2.4  for stack of 51-67
		Stack = -2.1  for stack of 52-66
		Stack = -3.3  for stack of 53-65
	Helix total = -9.9
	Hairpin = 4.8  for closure of 54-64


	Total energy = -61.0



