Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    55:82 56:81 57:80 58:79 59:78 189:223 190:222 191:221
	    192:220 193:219 194:218 195:217 238:271 239:270 240:269 241:268
	    242:267 243:266 244:265 290:330 291:329 292:328 293:327 294:326
	    296:324
	Energy of Broken Structure: -72.4
	Energy of Pseudo-Helices:   -42.4
	Pseudoknot Energy Penalty:  35.7
	Total Free Energy:          -79.1
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-390
		Stack = -1.5  for stack of 2-389
		Stack = -2.1  for stack of 3-388
		Stack = -2.4  for stack of 4-387
		Stack = -1.1  for stack of 5-386
		Stack = -2.1  for stack of 6-385
	Helix total = -12.5
	Multiloop = 5.0  for closure of 7-384
		Stack = -3.3  for stack of 367-383
		Stack = -3.3  for stack of 368-382
		Stack = -3.3  for stack of 369-381
		Stack = -3.3  for stack of 370-380
	Helix total = -13.2
	Hairpin = 4.4  for closure of 371-379
		Stack = -2.1  for stack of 19-363
		Stack = -1.4  for stack of 20-362
		Stack = -0.6  for stack of 21-361
		Stack = -2.1  for stack of 22-360
		Stack = -2.5  for stack of 23-359
	Helix total = -8.7
	Internal/bulge = 3.9  for closure of 24-358	Size = 15
		Stack = -1.4  for stack of 33-350
		Stack = -1.3  for stack of 34-349
		Stack = -1.1  for stack of 35-348
		Stack = -2.1  for stack of 36-347
	Helix total = -5.9
	Internal/bulge = 3.1  for closure of 37-346	Size = 12
		Stack = -2.4  for stack of 43-338
		Stack = -3.3  for stack of 44-337
		Stack = -3.3  for stack of 45-336
		Stack = -2.5  for stack of 46-335
	Helix total = -11.5
	Multiloop = 4.7  for closure of 47-334
		Stack = -3.3  for stack of 273-311
		Stack = -3.4  for stack of 274-310
		Stack = -3.3  for stack of 275-309
		Stack = -3.3  for stack of 276-308
	Helix total = -13.3
	Internal/bulge = 2.8  for closure of 277-307	Size = 2
		Stack = -2.4  for stack of 280-306
		Stack = -3.3  for stack of 281-305
		Stack = -2.4  for stack of 282-304
		Stack = -0.9  for stack of 283-303
		Stack = -2.2  for stack of 284-302
	Helix total = -11.2
	Hairpin = 5.4  for closure of 285-301
		Stack = -2.1  for stack of 227-255
		Stack = -0.6  for stack of 228-254
		Stack = -2.4  for stack of 229-253
		Stack = -2.1  for stack of 230-252
		Stack = -2.1  for stack of 231-251
		Stack = -3.4  for stack of 232-250
		Stack = -2.4  for stack of 233-249
		Stack = -2.5  for stack of 234-248
		Stack = -0.5  for stack of 235-247
	Helix total = -18.1
	Hairpin = 5.3  for closure of 236-246
		Stack = -2.4  for stack of 173-210
		Stack = -2.5  for stack of 174-209
		Stack = -1.5  for stack of 175-208
		Stack = -2.1  for stack of 176-207
		Stack = -2.1  for stack of 177-206
	Helix total = -10.6
	Internal/bulge = 2.3  for closure of 178-205	Size = 4
		Stack = -3.3  for stack of 180-201
		Stack = -2.4  for stack of 181-200
		Stack = -3.3  for stack of 182-199
		Stack = -3.3  for stack of 183-198
	Helix total = -12.3
	Hairpin = 5.6  for closure of 184-197
	Helix total = 0.0
	Internal/bulge = 1.5  for closure of 128-164	Size = 4
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 131-161	Size = 2
		Stack = -3.4  for stack of 133-159
	Helix total = -3.4
	Hairpin = 6.4  for closure of 134-158
		Stack = -2.4  for stack of 48-68
		Stack = -2.4  for stack of 49-67
		Stack = -2.1  for stack of 50-66
		Stack = -1.5  for stack of 51-65
	Helix total = -8.4
	Hairpin = 6.8  for closure of 52-64


	Total energy = -72.4



