Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    48:66 49:65 50:64 51:63 52:62 174:205 175:204 176:203
	    177:202 178:201 179:200 221:256 222:255 223:254 224:253 225:252
	    226:251 227:250 228:249 273:311 274:310 275:309 276:308 277:307
	    278:306 279:305
	Energy of Broken Structure: -82.6
	Energy of Pseudo-Helices:   -44.2
	Pseudoknot Energy Penalty:  32.1
	Total Free Energy:          -94.7
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-372
		Stack = -1.5  for stack of 2-371
		Stack = -2.1  for stack of 3-370
		Stack = -2.4  for stack of 4-369
		Stack = -2.2  for stack of 5-368
		Stack = -2.4  for stack of 6-367
	Helix total = -13.9
	Multiloop = 5.1  for closure of 7-366
		Stack = -3.4  for stack of 349-365
		Stack = -2.4  for stack of 350-364
		Stack = -3.3  for stack of 351-363
		Stack = -3.3  for stack of 352-362
	Helix total = -12.4
	Hairpin = 4.4  for closure of 353-361
		Stack = -2.4  for stack of 20-345
		Stack = -1.5  for stack of 21-344
		Stack = -2.1  for stack of 22-343
		Stack = -1.5  for stack of 23-342
		Stack = -1.3  for stack of 24-341
	Helix total = -8.8
	Internal/bulge = 0.8  for closure of 25-340	Size = 2
		Stack = -2.2  for stack of 27-338
	Helix total = -2.2
	Internal/bulge = 1.4  for closure of 28-337	Size = 6
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 32-333	Size = 4
		Stack = -2.1  for stack of 35-330
		Stack = -0.9  for stack of 36-329
		Stack = -0.9  for stack of 37-328
		Stack = -2.1  for stack of 38-327
		Stack = -2.2  for stack of 39-326
		Stack = -1.0  for stack of 40-325
	Helix total = -9.2
	Internal/bulge = 4.5  for closure of 41-324	Size = 5
		Stack = -2.1  for stack of 43-319
		Stack = -2.1  for stack of 44-318
		Stack = -3.3  for stack of 45-317
		Stack = -2.2  for stack of 46-316
	Helix total = -9.7
	Multiloop = 4.1  for closure of 47-315
		Stack = -1.4  for stack of 259-294
		Stack = -0.9  for stack of 260-293
		Stack = -0.9  for stack of 261-292
		Stack = -0.9  for stack of 262-291
		Stack = -2.1  for stack of 263-290
		Stack = -2.4  for stack of 264-289
		Stack = -1.1  for stack of 265-288
	Helix total = -9.7
	Internal/bulge = 1.9  for closure of 266-287	Size = 2
	Helix total = 0.0
	Internal/bulge = 3.3  for closure of 268-285	Size = 2
		Stack = -3.4  for stack of 269-282
		Stack = -3.3  for stack of 270-281
	Helix total = -6.7
	Hairpin = 4.5  for closure of 271-280
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 207-240	Size = 2
		Stack = -3.4  for stack of 209-238
		Stack = -2.1  for stack of 210-237
		Stack = -2.1  for stack of 211-236
	Helix total = -7.6
	Internal/bulge = 0.5  for closure of 212-235	Size = 2
		Stack = -2.1  for stack of 214-233
		Stack = -1.3  for stack of 215-232
		Stack = -1.1  for stack of 216-231
		Stack = -1.3  for stack of 217-230
	Helix total = -5.8
	Hairpin = 5.4  for closure of 218-229
		Stack = -2.4  for stack of 157-193
		Stack = -2.5  for stack of 158-192
		Stack = -1.5  for stack of 159-191
	Helix total = -6.4
	Internal/bulge = 1.4  for closure of 160-190	Size = 6
		Stack = -3.3  for stack of 164-186
	Helix total = -3.3
	Internal/bulge = 0.4  for closure of 165-185	Size = 2
		Stack = -3.4  for stack of 167-183
		Stack = -2.1  for stack of 168-182
	Helix total = -5.5
	Hairpin = 5.1  for closure of 169-181
		Stack = -2.1  for stack of 139-156
		Stack = -3.3  for stack of 140-155
		Stack = -3.4  for stack of 141-154
		Stack = -2.1  for stack of 142-153
		Stack = -1.3  for stack of 143-152
		Stack = -1.1  for stack of 144-151
	Helix total = -13.3
	Hairpin = 5.4  for closure of 145-150
		Stack = -2.4  for stack of 110-134
		Stack = -3.4  for stack of 111-133
		Stack = -2.1  for stack of 112-132
	Helix total = -7.9
	Internal/bulge = 1.9  for closure of 113-131	Size = 2
		Stack = -0.9  for stack of 115-129
		Stack = -1.0  for stack of 116-128
		Stack = -2.5  for stack of 117-127
		Stack = -2.1  for stack of 118-126
	Helix total = -6.5
	Hairpin = 4.2  for closure of 119-125
		Stack = -3.4  for stack of 54-77
		Stack = -3.3  for stack of 55-76
		Stack = -2.4  for stack of 56-75
		Stack = -3.4  for stack of 57-74
		Stack = -2.1  for stack of 58-73
	Helix total = -14.6
	Hairpin = 5.2  for closure of 59-72


	Total energy = -82.6



