Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    48:64 49:63 50:62 51:61 52:60 158:194 159:193 160:192
	    161:191 162:190 163:189 211:240 212:239 213:238 214:237 215:236
	    216:235 263:305 264:304 265:303 266:302 267:301 268:300 269:299
	Energy of Broken Structure: -61.6
	Energy of Pseudo-Helices:   -38.2
	Pseudoknot Energy Penalty:  33.1
	Total Free Energy:          -66.7
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-366
		Stack = -1.5  for stack of 2-365
		Stack = -2.1  for stack of 3-364
		Stack = -3.4  for stack of 4-363
		Stack = -3.3  for stack of 5-362
		Stack = -2.4  for stack of 6-361
	Helix total = -16.0
	Multiloop = 5.1  for closure of 7-360
		Stack = -3.4  for stack of 343-359
		Stack = -2.4  for stack of 344-358
		Stack = -3.3  for stack of 345-357
		Stack = -3.3  for stack of 346-356
	Helix total = -12.4
	Hairpin = 5.0  for closure of 347-355
		Stack = -2.1  for stack of 20-339
		Stack = -1.1  for stack of 21-338
		Stack = -2.1  for stack of 22-337
		Stack = -2.5  for stack of 23-336
		Stack = -1.4  for stack of 24-335
		Stack = -2.5  for stack of 25-334
		Stack = -1.0  for stack of 26-333
	Helix total = -12.7
	Internal/bulge = 1.9  for closure of 27-332	Size = 10
		Stack = -2.5  for stack of 33-326
		Stack = -2.4  for stack of 34-325
		Stack = -2.2  for stack of 35-324
	Helix total = -7.1
	Internal/bulge = -0.7  for closure of 36-323	Size = 2
		Stack = -0.9  for stack of 38-321
		Stack = -1.1  for stack of 39-320
		Stack = -1.3  for stack of 40-319
	Helix total = -3.3
	Internal/bulge = 4.5  for closure of 41-318	Size = 5
		Stack = -2.1  for stack of 43-313
		Stack = -2.2  for stack of 44-312
		Stack = -2.1  for stack of 45-311
		Stack = -1.3  for stack of 46-310
	Helix total = -7.7
	Multiloop = 4.6  for closure of 47-309
		Stack = -2.5  for stack of 243-285
		Stack = -0.6  for stack of 244-284
		Stack = -1.3  for stack of 245-283
		Stack = -2.1  for stack of 246-282
		Stack = -2.5  for stack of 247-281
		Stack = -1.5  for stack of 248-280
		Stack = -3.3  for stack of 249-279
		Stack = -2.1  for stack of 250-278
	Helix total = -15.9
	Internal/bulge = 2.1  for closure of 251-277	Size = 9
		Stack = -3.4  for stack of 257-272
		Stack = -3.3  for stack of 258-271
	Helix total = -6.7
	Hairpin = 5.1  for closure of 259-270
		Stack = -0.9  for stack of 199-225
		Stack = -1.3  for stack of 200-224
		Stack = -0.9  for stack of 201-223
		Stack = -0.9  for stack of 202-222
		Stack = -1.4  for stack of 203-221
		Stack = 0.3  for stack of 204-220
		Stack = -2.5  for stack of 205-219
	Helix total = -7.6
	Hairpin = 5.6  for closure of 206-218
	Helix total = 0.0
	Internal/bulge = 1.4  for closure of 143-180	Size = 4
		Stack = -3.3  for stack of 146-177
	Helix total = -3.3
	Internal/bulge = 4.5  for closure of 147-176	Size = 5
		Stack = -2.4  for stack of 149-171
		Stack = -2.1  for stack of 150-170
		Stack = -1.0  for stack of 151-169
		Stack = -1.3  for stack of 152-168
		Stack = -2.2  for stack of 153-167
		Stack = -2.1  for stack of 154-166
		Stack = -0.5  for stack of 155-165
	Helix total = -11.6
	Hairpin = 5.8  for closure of 156-164
		Stack = -1.4  for stack of 115-141
		Stack = -2.5  for stack of 116-140
	Helix total = -3.9
	Internal/bulge = 1.9  for closure of 117-139	Size = 2
	Helix total = 0.0
	Internal/bulge = 2.4  for closure of 119-137	Size = 1 BP stack across bulge = -1.4
		Stack = -2.1  for stack of 121-136
		Stack = -3.4  for stack of 122-135
	Helix total = -5.5
	Hairpin = 5.5  for closure of 123-134
		Stack = -2.2  for stack of 53-77
	Helix total = -2.2
	Internal/bulge = 1.7  for closure of 54-76	Size = 2
		Stack = -2.2  for stack of 56-74
		Stack = -2.4  for stack of 57-73
		Stack = -2.2  for stack of 58-72
	Helix total = -6.8
	Hairpin = 6.4  for closure of 59-71


	Total energy = -61.6



