Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    49:65 50:64 51:63 52:62 53:61 157:193 158:192 159:191
	    160:190 161:189 162:188 198:224 199:223 200:222 202:220 204:218
	    261:302 262:301 263:300 264:299 265:298 266:297 267:296
	Energy of Broken Structure: -54.5
	Energy of Pseudo-Helices:   -30.1
	Pseudoknot Energy Penalty:  34.0
	Total Free Energy:          -50.6
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-363
		Stack = -1.5  for stack of 2-362
		Stack = -2.1  for stack of 3-361
		Stack = -2.4  for stack of 4-360
		Stack = -1.1  for stack of 5-359
		Stack = -2.1  for stack of 6-358
	Helix total = -12.5
	Multiloop = 6.6  for closure of 7-357
		Stack = -2.1  for stack of 340-356
		Stack = -3.3  for stack of 341-355
		Stack = -3.3  for stack of 342-354
		Stack = -3.3  for stack of 343-353
	Helix total = -12.0
	Hairpin = 4.4  for closure of 344-352
		Stack = -2.1  for stack of 21-336
		Stack = -0.6  for stack of 22-335
		Stack = -0.5  for stack of 23-334
		Stack = -2.5  for stack of 24-333
		Stack = -2.4  for stack of 25-332
		Stack = -2.2  for stack of 26-331
		Stack = -1.3  for stack of 27-330
	Helix total = -11.6
	Internal/bulge = 2.4  for closure of 28-329	Size = 6
	Helix total = 0.0
	Internal/bulge = 1.3  for closure of 32-325	Size = 4
		Stack = -2.4  for stack of 35-322
		Stack = -2.2  for stack of 36-321
		Stack = -0.9  for stack of 37-320
		Stack = -1.0  for stack of 38-319
		Stack = -1.3  for stack of 39-318
		Stack = -2.2  for stack of 40-317
	Helix total = -10.0
	Internal/bulge = 3.3  for closure of 41-316	Size = 7
		Stack = -2.4  for stack of 44-310
		Stack = -2.4  for stack of 45-309
		Stack = -1.1  for stack of 46-308
		Stack = -1.3  for stack of 47-307
	Helix total = -7.2
	Multiloop = 2.6  for closure of 48-306
		Stack = -2.5  for stack of 242-283
		Stack = -0.6  for stack of 243-282
		Stack = -0.9  for stack of 244-281
		Stack = -0.9  for stack of 245-280
		Stack = -2.1  for stack of 246-279
		Stack = -2.4  for stack of 247-278
		Stack = -1.1  for stack of 248-277
		Stack = -1.3  for stack of 249-276
		Stack = -0.6  for stack of 250-275
	Helix total = -12.4
	Internal/bulge = 1.8  for closure of 251-274	Size = 7
		Stack = -3.4  for stack of 256-270
		Stack = -3.3  for stack of 257-269
	Helix total = -6.7
	Hairpin = 5.6  for closure of 258-268
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 209-240	Size = 2
		Stack = -2.1  for stack of 211-238
		Stack = -0.6  for stack of 212-237
		Stack = -1.3  for stack of 213-236
		Stack = -0.9  for stack of 214-235
	Helix total = -4.9
	Hairpin = 6.8  for closure of 215-234
		Stack = -2.4  for stack of 141-177
		Stack = -1.4  for stack of 142-176
		Stack = -1.5  for stack of 143-175
		Stack = -3.3  for stack of 144-174
	Helix total = -8.6
	Internal/bulge = 2.0  for closure of 145-173	Size = 6
		Stack = -2.4  for stack of 149-169
		Stack = -1.1  for stack of 150-168
		Stack = -1.0  for stack of 151-167
		Stack = -2.1  for stack of 152-166
		Stack = -2.4  for stack of 153-165
		Stack = -1.4  for stack of 154-164
	Helix total = -10.4
	Hairpin = 5.1  for closure of 155-163
		Stack = -2.5  for stack of 118-138
		Stack = -1.0  for stack of 119-137
		Stack = -2.1  for stack of 120-136
	Helix total = -5.6
	Internal/bulge = 1.2  for closure of 121-135	Size = 2
	Helix total = 0.0
	Hairpin = 5.5  for closure of 123-133
		Stack = -2.2  for stack of 54-78
	Helix total = -2.2
	Internal/bulge = 1.9  for closure of 55-77	Size = 2
		Stack = -2.2  for stack of 57-75
		Stack = -2.4  for stack of 58-74
		Stack = -2.2  for stack of 59-73
	Helix total = -6.8
	Hairpin = 6.4  for closure of 60-72


	Total energy = -54.5



