Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    29:45 30:44 31:43 32:42 33:41 141:176 142:175 143:174
	    144:173 145:172 194:223 195:222 196:221 197:220 198:219 242:283
	    243:282 244:281 245:280 247:278
	Energy of Broken Structure: -37.3
	Energy of Pseudo-Helices:   -33.6
	Pseudoknot Energy Penalty:  32.7
	Total Free Energy:          -38.2
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = 0.5
		Stack = -0.9  for stack of 1-316
		Stack = -0.6  for stack of 2-315
		Stack = -2.5  for stack of 3-314
		Stack = -2.1  for stack of 4-313
		Stack = -2.2  for stack of 5-312
		Stack = -2.1  for stack of 6-311
	Helix total = -10.4
	Internal/bulge = 3.1  for closure of 7-310	Size = 7
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 12-306	Size = 2
		Stack = -2.5  for stack of 14-304
		Stack = -2.1  for stack of 15-303
		Stack = -0.9  for stack of 16-302
		Stack = -1.0  for stack of 17-301
		Stack = -1.3  for stack of 18-300
		Stack = -0.9  for stack of 19-299
	Helix total = -8.7
	Internal/bulge = 4.3  for closure of 20-298	Size = 9
		Stack = -2.4  for stack of 24-291
		Stack = -2.2  for stack of 25-290
		Stack = -0.9  for stack of 26-289
		Stack = -1.3  for stack of 27-288
	Helix total = -6.8
	Multiloop = 4.3  for closure of 28-287
		Stack = -3.4  for stack of 226-263
	Helix total = -3.4
	Internal/bulge = 1.9  for closure of 227-262	Size = 3
	Helix total = 0.0
	Internal/bulge = 4.8  for closure of 230-260	Size = 13
		Stack = -2.1  for stack of 237-252
		Stack = -3.4  for stack of 238-251
		Stack = -3.3  for stack of 239-250
	Helix total = -8.8
	Hairpin = 4.1  for closure of 240-249
		Stack = -0.9  for stack of 182-208
		Stack = -1.3  for stack of 183-207
		Stack = -0.9  for stack of 184-206
		Stack = -0.9  for stack of 185-205
		Stack = -2.2  for stack of 186-204
		Stack = -2.1  for stack of 187-203
		Stack = -0.9  for stack of 188-202
		Stack = -0.9  for stack of 189-201
	Helix total = -10.1
	Hairpin = 5.5  for closure of 190-200
		Stack = -2.4  for stack of 125-162
		Stack = -1.4  for stack of 126-161
		Stack = -1.5  for stack of 127-160
		Stack = -3.3  for stack of 128-159
		Stack = -2.1  for stack of 129-158
	Helix total = -10.7
	Internal/bulge = 3.3  for closure of 130-157	Size = 2
		Stack = -2.1  for stack of 131-154
		Stack = -2.4  for stack of 132-153
		Stack = -2.4  for stack of 133-152
	Helix total = -6.9
	Internal/bulge = 0.5  for closure of 134-151	Size = 1 BP stack across bulge = -3.3
		Stack = -3.4  for stack of 135-149
		Stack = -2.1  for stack of 136-148
		Stack = -1.4  for stack of 137-147
	Helix total = -6.9
	Hairpin = 6.0  for closure of 138-146
	Helix total = 0.0
	Internal/bulge = 1.0  for closure of 97-122	Size = 2
		Stack = -0.6  for stack of 99-120
		Stack = -1.3  for stack of 100-119
		Stack = -0.6  for stack of 101-118
		Stack = -2.5  for stack of 102-117
		Stack = -2.1  for stack of 103-116
		Stack = -2.1  for stack of 104-115
	Helix total = -9.2
	Hairpin = 4.4  for closure of 105-114
		Stack = -2.2  for stack of 34-57
	Helix total = -2.2
	Internal/bulge = 1.7  for closure of 35-56	Size = 2
		Stack = -2.2  for stack of 37-54
		Stack = -2.4  for stack of 38-53
		Stack = -2.2  for stack of 39-52
	Helix total = -6.8
	Hairpin = 6.3  for closure of 40-51


	Total energy = -37.3



